Molecular epidemiology of peste des petits ruminants in Niger: An update.
Africa, Western
Animals
Disease Outbreaks
/ veterinary
Goat Diseases
/ epidemiology
Goats
/ virology
Molecular Epidemiology
Niger
/ epidemiology
Nucleocapsid Proteins
/ genetics
Peste-des-Petits-Ruminants
/ epidemiology
Peste-des-petits-ruminants virus
/ genetics
Phylogeny
Ruminants
Sheep
Sheep Diseases
/ epidemiology
Niger
lineage II
lineage IV
molecular epidemiology
peste des petits ruminants
small ruminants morbillivirus
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
May 2020
May 2020
Historique:
received:
09
04
2019
revised:
02
12
2019
accepted:
03
12
2019
pubmed:
16
12
2019
medline:
21
10
2020
entrez:
16
12
2019
Statut:
ppublish
Résumé
Like many West African countries, outbreaks of peste des petits ruminants (PPR), an economically important disease of goats and sheep, are regularly reported in Niger. The causative virus, peste des petits ruminants virus (PPRV), can be differentiated into four genetically distinct lineages. A publication in 2018 identified three PPRV lineages circulating in the country in 2001 (lineages I and II) and 2013 (lineage IV), respectively. In this present study, more recent samples were collected from goats and sheep in locations throughout Niger between 2011 and 2017. Twelve PPRV-positive samples were characterized by sequencing of a segment of the nucleocapsid protein (N) gene. Phylogenetic analysis of the sequences identified viruses from lineages II and IV only. The analysis also indicated a shared origin of the viruses from Niger with PPRVs from neighbouring countries suggesting transboundary movement.
Substances chimiques
Nucleocapsid Proteins
0
Banques de données
GENBANK
['MK673120', 'MK673121', 'MK673122', 'MK673125', 'MK673123', 'MK673129', 'MK673124', 'MK673127', 'MK673126', 'MK673128', 'MK673130', 'MK673131', 'MG694466', 'MG694467', 'MG694464', 'MG694465', 'KF479425', 'KJ124726', 'KJ124768']
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1388-1392Subventions
Organisme : IAEA Peaceful Uses Initiative (PUI) VETLAB Network
Informations de copyright
© 2019 Blackwell Verlag GmbH.
Références
FAO (2017). Retrieved from http://www.fao.org/3/a-i6316e.pdf
Amarasinghe, G. K., Bào, Y., Basler, C. F., Bavari, S., Beer, M., Bejerman, N., … Kuhn, J. H. (2017). Taxonomy of the order Mononegavirales: Update. Archives of Virology, 162, 2493-2504. https://doi.org/10.1007/s00705-017-3311-7
Banyard, A. C., Parida, S., Batten, C., Oura, C., Kwiatek, O., & Libeau, G. (2010). Global distribution of peste des petits ruminants virus and prospects for improved diagnosis and control. Journal of General Virology, 91, 2885-2897. https://doi.org/10.1099/vir.0.025841-0
Baron, M. D., Diallo, A., Lancelot, R., & Libeau, G. (2016). Peste des petits ruminants virus. Advances in Virus Research, 95, 1-42. https://doi.org/10.1016/bs.aivir.2016.02.001
Couacy-Hymann, E., Roger, F., Hurard, C., Guillou, J. P., Libeau, G., & Diallo, A. (2002). Rapid and sensitive detection of peste des petits ruminants virus by a polymerase chain reaction assay. Journal of Virological Methods, 100, 17-25. https://doi.org/10.1016/S0166-0934(01)00386-X
Kwiatek, O., Minet, C., Grillet, C., Hurard, C., Carlsson, E., Karimov, B., … Libeau, G. (2007). Peste des petits ruminants (PPR) outbreak in Tajikistan. Journal of Comparative Pathology, 136, 111-119. https://doi.org/10.1016/j.jcpa.2006.12.002
Libeau, G., Diallo, A., & Parida, S. (2014). Evolutionary genetics underlying the spread of peste des petits ruminants virus. Animal Frontiers, 4, 14-20. https://doi.org/10.2527/af.2014-0003
MAG/EL (2017). Ministère de l'Agriculture et de l'Elevage, 2017. Rapport Annuel d'activités (p. 93). Niamey: MAG/EL.
OIE and FAO (2015). Global strategy for the control and eradication of PPR [Stratégie mondiale pour le contrôle et l'éradication de la peste des petits ruminants] (p. 88). Rapport technique, Paris, Rome: OIE, FAO.
Parida, S., Muniraju, M., Mahapatra, M., Muthuchelvan, D., Buczkowski, H., & Banyard, A. C. (2015). Peste des petits ruminants. Veterinary Microbiology, 181, 90-106. https://doi.org/10.1016/j.vetmic.2015.08.009
Salami, H., Croville, G., Kwiatek, O., Mariette, J., Klopp, C., Valière, S., … Libeau, G. (2014). Complete genome sequence of a field strain of peste des petits ruminants virus isolated during 2010-2014 epidemics in Senegal. Genome Announcements, 2(5), e00772-14. https://doi.org/10.1128/genomeA.00772-14
Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013). MEGA 6: Molecular evolution genetics analysis version 6.0. Molecular Biology and Evolution, 30, 2725-2729. https://doi.org/10.1093/molbev/mst197
Tounkara, K., Bataille, A., Adombi, C. M., Maikano, I., Djibo, G., Settypalli, T. B. K., … Libeau, G. (2018). First genetic characterization of peste des petits ruminants from Niger: On the advancing front of the Asian virus lineage. Transboundary and Emerging Diseases, 65, 1145-1151. https://doi.org/10.1111/tbed.12901
Woma, T. Y., Adombi, C. M., Yu, D., Qasim, A. M., Sabi, A. A., Maurice, N. A., … Quan, M. (2016). Co-circulation of Peste-des-Petits-Ruminants Virus Asian lineage IV with Lineage II in Nigeria. Transboundary and Emerging Diseases, 63, 235-242. https://doi.org/10.1111/tbed.12387