Complete genome sequencing and genetic analysis of a Japanese porcine torovirus strain detected in swine feces.

Animals Computational Biology Evolution, Molecular Feces / virology Genome, Viral Humans Japan Recombination, Genetic Swine Torovirus / genetics Torovirus Infections / veterinary Whole Genome Sequencing

Journal

Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870

Informations de publication

Date de publication:
Feb 2020
Historique:
received: 19 09 2019
accepted: 01 12 2019
pubmed: 22 12 2019
medline: 12 2 2020
entrez: 22 12 2019
Statut: ppublish

Résumé

We sequenced the complete genome of a porcine torovirus (PToV) strain from Japan for the first time. Whole-genome analysis revealed that this strain (Iba/2018) has a mosaic sequence composed of at least three genome backgrounds, related to US, Chinese and German PToV strains. Clear recombination breakpoints were detected in the M and HE coding regions. A similarity plot and structural analysis demonstrated that the HE coding region exhibits the highest diversity, and the most sequence variation was found in the lectin domain. PToVs were divided into two lineages in the HE region, whereas clear lineages were not found in other regions.

Identifiants

DOI: 10.1007/s00705-019-04514-4 PMID: 31863265
pubmed: 31863265
doi: 10.1007/s00705-019-04514-4
pii: 10.1007/s00705-019-04514-4
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

471-477

Subventions

Organisme : JSPS KAKENHI
ID : 15K07718
Organisme : JSPS KAKENHI
ID : 18K05977

Auteurs

Yuki Fujii (Y)

Kenpoku Livestock Hygiene Service Center, Mito, Ibaraki, 310-0002, Japan.

Yuki Kashima (Y)

Kenpoku Livestock Hygiene Service Center, Mito, Ibaraki, 310-0002, Japan.

Fujiko Sunaga (F)

School of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan.

Hiroshi Aoki (H)

Faculty of Veterinary Science, Nippon Veterinary and Life Science University, Musashino, Tokyo, 180-8602, Japan.

Ryo Imai (R)

Research and Education Center for Prevention of Global Infectious Disease of Animals, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai, Fuchu, Tokyo, 183-8509, Japan.

Kaori Sano (K)

Department of Pathology, National Institute of Infectious Diseases, Shinjuku, Tokyo, 162-0052, Japan.

Yukie Katayama (Y)

Research and Education Center for Prevention of Global Infectious Disease of Animals, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai, Fuchu, Tokyo, 183-8509, Japan.

Tsutomu Omatsu (T)

Research and Education Center for Prevention of Global Infectious Disease of Animals, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai, Fuchu, Tokyo, 183-8509, Japan.

Mami Oba (M)

Research and Education Center for Prevention of Global Infectious Disease of Animals, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai, Fuchu, Tokyo, 183-8509, Japan.

Tetsuya Furuya (T)

Cooperative Department of Veterinary Medicine, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.

Satoko Tsuzuku (S)

Kenpoku Livestock Hygiene Service Center, Mito, Ibaraki, 310-0002, Japan.

Yoshinao Ouchi (Y)

Kenpoku Livestock Hygiene Service Center, Mito, Ibaraki, 310-0002, Japan.

Junsuke Shirai (J)

Cooperative Department of Veterinary Medicine, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.

Tetsuya Mizutani (T)

Research and Education Center for Prevention of Global Infectious Disease of Animals, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai, Fuchu, Tokyo, 183-8509, Japan.

Tomoichiro Oka (T)

Department of Virology II, National Institute of Infectious Diseases, Musashimurayama, Tokyo, 208-0011, Japan.

Makoto Nagai (M)

School of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, 252-5201, Japan. m-nagai@azabu-u.ac.jp.
Research and Education Center for Prevention of Global Infectious Disease of Animals, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai, Fuchu, Tokyo, 183-8509, Japan. m-nagai@azabu-u.ac.jp.
ORCID: 0000-0001-5884-620X

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Complete genome sequencing and genetic...
questionsmedicales.fr › Sciences de l'information › Informatique › Biologie informatique › Complete genome sequencing and genetic...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Évolution moléculaire › Complete genome sequencing and genetic...
questionsmedicales.fr › Liquides et sécrétions biologiques › Fèces › Complete genome sequencing and genetic...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome viral › Complete genome sequencing and genetic...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Complete genome sequencing and genetic...
questionsmedicales.fr › Régions géographiques › Iles › Japon › Complete genome sequencing and genetic...
questionsmedicales.fr › Phénomènes génétiques › Recombinaison génétique › Complete genome sequencing and genetic...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Artiodactyla › Suidae › Complete genome sequencing and genetic...
questionsmedicales.fr › Virus › Virus à ARN › Virus à ARN à brin positif › Nidovirales › Coronaviridae › Torovirus › Complete genome sequencing and genetic...
questionsmedicales.fr › Infection › Maladies virales › Infections à virus à ARN › Infections à Nidovirales › Infections à Coronaviridae › Infections à torovirus › Complete genome sequencing and genetic...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Séquençage du génome entier › Complete genome sequencing and genetic...