Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement.


Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
30 12 2019
Historique:
received: 16 12 2019
accepted: 23 12 2019
pubmed: 31 12 2019
medline: 13 6 2020
entrez: 31 12 2019
Statut: epublish

Résumé

Eukaryotic DNA is packaged into nucleosome arrays, which are repositioned by chromatin remodeling complexes to control DNA accessibility. The

Identifiants

pubmed: 31886770
doi: 10.7554/eLife.54449
pii: 54449
pmc: PMC6959994
doi:
pii:

Substances chimiques

Cell Cycle Proteins 0
Chromosomal Proteins, Non-Histone 0
DNA, Fungal 0
DNA-Binding Proteins 0
Multiprotein Complexes 0
NPL6 protein, S cerevisiae 0
Nucleosomes 0
RSC complex, S cerevisiae 0
SWI-SNF-B chromatin-remodeling complex 0
Saccharomyces cerevisiae Proteins 0
Sfh1 protein, S cerevisiae 0
Transcription Factors 0

Banques de données

PDB
['6V8O', '6V92']

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NIGMS NIH HHS
ID : R35 GM127018
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35-GM127018
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01-HL133678
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01-GM63072
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01-GM110064
Pays : United States
Organisme : NIH HHS
ID : U24GM129547
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01- GM110064
Pays : United States

Informations de copyright

© 2019, Patel et al.

Déclaration de conflit d'intérêts

AP, CM, BG, JL, SZ, JR, EN No competing interests declared

Références

Mol Syst Biol. 2011 Oct 11;7:539
pubmed: 21988835
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W244-8
pubmed: 15980461
Cell. 2019 Nov 27;179(6):1342-1356.e23
pubmed: 31759698
Nat Methods. 2019 Jun;16(6):471-477
pubmed: 31086343
J Biol Chem. 2007 Jul 20;282(29):20804-8
pubmed: 17535815
Mol Cell. 2001 Apr;7(4):741-51
pubmed: 11336698
Nucleic Acids Res. 2019 Jul 2;47(W1):W402-W407
pubmed: 31251384
Mol Cell. 2008 Dec 26;32(6):878-87
pubmed: 19111667
Cell. 2012 Mar 30;149(1):214-31
pubmed: 22464331
Genes Dev. 1996 Sep 1;10(17):2117-30
pubmed: 8804307
Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432
pubmed: 30357350
Cell Rep. 2019 Jan 2;26(1):279-292.e5
pubmed: 30605682
Nucleic Acids Res. 2016 Jul 8;44(W1):W344-50
pubmed: 27166375
Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3345-50
pubmed: 23401505
Nat Methods. 2017 Aug;14(8):793-796
pubmed: 28671674
Science. 2019 Nov 15;366(6467):838-843
pubmed: 31672915
Genes Dev. 2002 Apr 1;16(7):806-19
pubmed: 11937489
J Struct Biol. 2013 Nov;184(2):261-70
pubmed: 23999189
Nucleic Acids Res. 2005 Jun 10;33(10):3424-34
pubmed: 15951514
Cell. 2018 Nov 15;175(5):1272-1288.e20
pubmed: 30343899
PLoS One. 2010 Jan 26;5(1):e8903
pubmed: 20126658
Structure. 2005 Feb;13(2):267-75
pubmed: 15698570
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Methods. 2001 Jul;24(3):218-29
pubmed: 11403571
Cell. 2005 May 6;121(3):363-73
pubmed: 15882619
J Mol Biol. 1999 Sep 17;292(2):195-202
pubmed: 10493868
Nucleic Acids Res. 2010 Mar;38(5):1441-9
pubmed: 20015969
Protein Cell. 2018 Dec;9(12):1045-1049
pubmed: 29546678
Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13477-80
pubmed: 12368485
J Struct Biol. 2016 Jan;193(1):1-12
pubmed: 26592709
Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2057-62
pubmed: 16461455
Nat Struct Mol Biol. 2008 Dec;15(12):1272-7
pubmed: 19029894
Structure. 2015 Jul 7;23(7):1344-9
pubmed: 26073604
IUCrJ. 2019 Jan 01;6(Pt 1):5-17
pubmed: 30713699
Cell. 2016 Oct 20;167(3):709-721.e12
pubmed: 27768892
Annu Rev Biochem. 2009;78:273-304
pubmed: 19355820
Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):531-544
pubmed: 29872004
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W349-57
pubmed: 23748958
Nat Struct Biol. 2003 Feb;10(2):141-5
pubmed: 12524530
Sci Adv. 2015 Jun 12;1(5):e1500447
pubmed: 26601204
Nature. 2017 Apr 27;544(7651):440-445
pubmed: 28424519
FEBS J. 2018 Nov;285(22):4165-4180
pubmed: 30222246
Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):1931-6
pubmed: 22308335
Nat Struct Mol Biol. 2016 Aug;23(8):722-9
pubmed: 27399259
PLoS Genet. 2007 Jun;3(6):e92
pubmed: 17542652
J Biol Chem. 2014 Mar 21;289(12):8353-63
pubmed: 24515106
Elife. 2018 Jun 01;7:
pubmed: 29856314
Nucleic Acids Res. 2009 Jul;37(12):3840-9
pubmed: 19386622
Nature. 2019 Mar;567(7748):409-413
pubmed: 30867599
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W529-33
pubmed: 20478830
Mol Cell Biol. 2007 Mar;27(5):1602-13
pubmed: 17178837
Mol Cell. 2016 May 5;62(3):453-461
pubmed: 27153540
Cell Rep. 2017 Feb 28;18(9):2124-2134
pubmed: 28249159
Elife. 2018 Nov 09;7:
pubmed: 30412051
Acta Crystallogr D Struct Biol. 2018 Sep 1;74(Pt 9):814-840
pubmed: 30198894
Cell. 2012 Jun 22;149(7):1461-73
pubmed: 22726434
EMBO J. 2004 Mar 24;23(6):1348-59
pubmed: 15014446
Cell Rep. 2017 Feb 28;18(9):2135-2147
pubmed: 28249160
Genes Dev. 2002 Aug 15;16(16):2120-34
pubmed: 12183366
J Mol Biol. 2017 Jun 2;429(11):1650-1660
pubmed: 28438634
Proc Natl Acad Sci U S A. 2017 Feb 14;114(7):1536-1541
pubmed: 28137832
Elife. 2013 Sep 10;2:e01456
pubmed: 24040512
J Struct Biol. 2005 Jul;151(1):41-60
pubmed: 15890530
Nat Methods. 2017 Apr;14(4):331-332
pubmed: 28250466
Cell. 1996 Dec 27;87(7):1249-60
pubmed: 8980231
Nucleic Acids Res. 2013 Oct;41(19):9168-82
pubmed: 23907388
Science. 1994 Jul 1;265(5168):53-60
pubmed: 8016655
Bioinformatics. 2015 Mar 15;31(6):857-63
pubmed: 25391399
Mol Cell Biol. 2008 Oct;28(19):6010-21
pubmed: 18644858
Nucleic Acids Res. 2011 Oct;39(19):8378-91
pubmed: 21749977
Mol Cell. 1999 Nov;4(5):715-23
pubmed: 10619019
Nat Struct Mol Biol. 2007 Jun;14(6):540-7
pubmed: 17496903
Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):4913-8
pubmed: 17360331
Genetics. 2006 Feb;172(2):795-809
pubmed: 16204215
Protein Sci. 2018 Jan;27(1):14-25
pubmed: 28710774

Auteurs

Avinash B Patel (AB)

Biophysics Graduate Group, University of California, Berkeley, Berkeley, United States.
Molecular Biophysics and Integrative Bio-Imaging Division, Lawrence Berkeley National Laboratory, Berkeley, United States.

Camille M Moore (CM)

Molecular and Cell Biology Department, University of California, Berkeley, Berkeley, United States.

Basil J Greber (BJ)

Molecular Biophysics and Integrative Bio-Imaging Division, Lawrence Berkeley National Laboratory, Berkeley, United States.
California Institute for Quantitative Biology (QB3), University of California, Berkeley, Berkeley, United States.

Jie Luo (J)

The Institute for Systems Biology, Seattle, United States.

Stefan A Zukin (SA)

Chemistry Department, University of California, Berkeley, Berkeley, United States.

Jeff Ranish (J)

The Institute for Systems Biology, Seattle, United States.

Eva Nogales (E)

Molecular Biophysics and Integrative Bio-Imaging Division, Lawrence Berkeley National Laboratory, Berkeley, United States.
Molecular and Cell Biology Department, University of California, Berkeley, Berkeley, United States.
California Institute for Quantitative Biology (QB3), University of California, Berkeley, Berkeley, United States.
Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States.

Articles similaires

Photosynthesis Ribulose-Bisphosphate Carboxylase Carbon Dioxide Molecular Dynamics Simulation Cyanobacteria
Adenosine Triphosphate Adenosine Diphosphate Mitochondrial ADP, ATP Translocases Binding Sites Mitochondria
Triticum Transcription Factors Gene Expression Regulation, Plant Plant Proteins Salt Stress
Humans DNA Methylation Female Male Alcohol Oxidoreductases

Classifications MeSH