Decoding the Role of Satellite DNA in Genome Architecture and Plasticity-An Evolutionary and Clinical Affair.

Adaptation, Physiological / genetics Animals Centromere / genetics Chromosomes / genetics DNA Transposable Elements / genetics DNA, Satellite / genetics Eukaryota Evolution, Molecular Gene Rearrangement / genetics Genomics Heterochromatin / genetics Humans
Robertsonian translocations chromosome restructuring genome architecture satellite DNA satellite DNA transcription

Journal

Genes
ISSN: 2073-4425
Titre abrégé: Genes (Basel)
Pays: Switzerland
ID NLM: 101551097

Informations de publication

Date de publication:
09 01 2020
Historique:
received: 16 12 2019
revised: 29 12 2019
accepted: 08 01 2020
entrez: 16 1 2020
pubmed: 16 1 2020
medline: 24 6 2020
Statut: epublish

Résumé

Repetitive DNA is a major organizational component of eukaryotic genomes, being intrinsically related with their architecture and evolution. Tandemly repeated satellite DNAs (satDNAs) can be found clustered in specific heterochromatin-rich chromosomal regions, building vital structures like functional centromeres and also dispersed within euchromatin. Interestingly, despite their association to critical chromosomal structures, satDNAs are widely variable among species due to their high turnover rates. This dynamic behavior has been associated with genome plasticity and chromosome rearrangements, leading to the reshaping of genomes. Here we present the current knowledge regarding satDNAs in the light of new genomic technologies, and the challenges in the study of these sequences. Furthermore, we discuss how these sequences, together with other repeats, influence genome architecture, impacting its evolution and association with disease.

Identifiants

DOI: 10.3390/genes11010072 PMID: 31936645 PMC: PMC7017282
pubmed: 31936645
pii: genes11010072
doi: 10.3390/genes11010072
pmc: PMC7017282
pii:
doi:

Substances chimiques

DNA Transposable Elements 0
DNA, Satellite 0
Heterochromatin 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Références

Proc Natl Acad Sci U S A. 2014 Jul 22;111(29):10630-5
pubmed: 25006263
Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18793-8
pubmed: 25512552
BMC Genomics. 2009 Jul 24;10:334
pubmed: 19630942
Nat Genet. 2003 Nov;35(3):213-4
pubmed: 14593407
Dev Cell. 2015 May 4;33(3):314-27
pubmed: 25942623
Development. 2015 May 15;142(10):1806-17
pubmed: 25926359
Gene. 2008 Feb 15;409(1-2):72-82
pubmed: 18182173
Cytogenet Genome Res. 2006;114(2):140-6
pubmed: 16825766
J Cell Biol. 1992 Feb;116(3):585-96
pubmed: 1730770
Cell Rep. 2018 Jun 5;23(10):2874-2880
pubmed: 29874575
Q Rev Biol. 1995 Sep;70(3):297-320
pubmed: 7568673
Nat Genet. 2011 Mar;43(3):220-7
pubmed: 21317888
Genome Biol Evol. 2019 Apr 1;11(4):1152-1165
pubmed: 30888421
Sci Rep. 2016 Jul 07;6:28333
pubmed: 27385065
Science. 2011 Feb 4;331(6017):593-6
pubmed: 21233348
Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):1928-1933
pubmed: 28167779
Nucleic Acids Res. 2017 Dec 15;45(22):12848-12861
pubmed: 29121353
Hereditas. 1969;63(1):68-169
pubmed: 5399228
Nature. 1994 Sep 15;371(6494):215-20
pubmed: 8078581
Bioinformatics. 2014 Oct 15;30(20):2843-51
pubmed: 24974202
Chromosome Res. 2015 Sep;23(3):463-77
pubmed: 26403245
Future Med Chem. 2010 Apr;2(4):619-46
pubmed: 20563318
Chromosome Res. 2006;14(2):177-86
pubmed: 16544191
J Cell Biol. 2007 Nov 5;179(3):411-21
pubmed: 17984319
Genetics. 2007 Jun;176(2):1343-9
pubmed: 17409066
Chromosome Res. 2015 Sep;23(3):441-61
pubmed: 26384818
Nature. 2014 Sep 11;513(7517):195-201
pubmed: 25209798
Chromosome Res. 2015 Sep;23(3):505-31
pubmed: 26395902
Genome Res. 2016 Jan;26(1):130-9
pubmed: 26560630
Genes (Basel). 2019 May 08;10(5):
pubmed: 31072070
Bioessays. 2015 May;37(5):479-88
pubmed: 25739389
Elife. 2017 Aug 01;6:
pubmed: 28760201
Nucleic Acids Res. 2012 Dec;40(22):11178-88
pubmed: 23066104
Nucleic Acids Res. 1985 Apr 25;13(8):2731-43
pubmed: 2987865
Science. 2002 Sep 13;297(5588):1833-7
pubmed: 12193640
Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17600-1
pubmed: 17101965
Bioinformatics. 2014 Dec 15;30(24):3506-14
pubmed: 25165095
Chromosome Res. 2015 Sep;23(3):421-6
pubmed: 26363799
J Genet. 2007 Apr;86(1):19-26
pubmed: 17656845
Chromosome Res. 2017 Oct;25(3-4):313-325
pubmed: 28916913
Chromosome Res. 2012 Aug;20(6):673-83
pubmed: 22847644
Cell Mol Life Sci. 2020 Apr;77(7):1371-1386
pubmed: 31346634
Sci Rep. 2017 Jul 25;7(1):6422
pubmed: 28743997
Genome Biol Evol. 2017 Nov 1;9(11):3073-3087
pubmed: 29608678
DNA Res. 2015 Dec;22(6):387-401
pubmed: 26428853
Chromosome Res. 2008;16(7):935-47
pubmed: 18704723
Cold Spring Harb Perspect Biol. 2010 Jun;2(6):a000695
pubmed: 20516127
Hereditas. 1993;119(3):233-7
pubmed: 8144361
Cytogenet Genome Res. 2009;126(1-2):49-62
pubmed: 20016156
Sci Rep. 2019 Apr 10;9(1):5856
pubmed: 30971780
Bioinformatics. 2013 Mar 15;29(6):792-3
pubmed: 23376349
Genetica. 1999;106(1-2):15-36
pubmed: 10710707
Genome Biol. 2016 Nov 25;17(1):239
pubmed: 27887629
J Cell Biol. 2004 Jan 5;164(1):25-33
pubmed: 14699086
Nature. 1980 Apr 17;284(5757):604-7
pubmed: 7366731
Chromosome Res. 2000;8(7):621-6
pubmed: 11117358
Mutat Res. 2007 Mar 1;616(1-2):46-59
pubmed: 17157332
Heredity (Edinb). 2015 Jul;115(1):1-2
pubmed: 25806543
Genome Res. 2009 May;19(5):934-42
pubmed: 19411607
Genome Res. 2008 Jan;18(1):30-8
pubmed: 18032720
Nat Rev Genet. 2009 Oct;10(10):691-703
pubmed: 19763152
Nucleic Acids Res. 2010 Jan;38(3):1009-21
pubmed: 19946019
Elife. 2017 Aug 01;6:
pubmed: 28760200
Nat Rev Mol Cell Biol. 2004 Jun;5(6):493-8
pubmed: 15173828
PLoS Biol. 2009 Oct;7(10):e1000234
pubmed: 19859525
Chromosoma. 2015 Jun;124(2):221-34
pubmed: 25387401
Mol Biol Evol. 2017 Apr 1;35(4):925-941
pubmed: 29361128
Ann Hum Genet. 1989 Jan;53(1):49-65
pubmed: 2658738
Genome Dyn. 2012;7:126-52
pubmed: 22759817
J Mol Biol. 1961 Dec;3:711-6
pubmed: 14456492
Chromosoma. 1971;33(3):319-44
pubmed: 5088497
Development. 2016 Nov 15;143(22):4101-4114
pubmed: 27875251
Cytogenet Cell Genet. 1995;69(3-4):179-84
pubmed: 7698006
Mol Biol Evol. 2012 Jan;29(1):7-11
pubmed: 21712468
JCI Insight. 2016 Jun 2;1(8):e86646
pubmed: 27699267
Front Genet. 2019 Feb 12;10:101
pubmed: 30809250
Mol Cell. 2015 Aug 6;59(3):426-36
pubmed: 26190260
Trends Genet. 2019 Aug;35(8):565-578
pubmed: 31200946
Nature. 2020 Sep;585(7823):79-84
pubmed: 32663838
Nucleic Acids Res. 2008 Feb;36(2):423-34
pubmed: 18039709
Mol Phylogenet Evol. 2015 Nov;92:193-203
pubmed: 26103000
Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):1979-84
pubmed: 22308327
J Mol Biol. 1987 Mar 20;194(2):161-70
pubmed: 3112413
Hereditas. 1979;90(2):281-9
pubmed: 437991
Cytogenet Genome Res. 2008;120(1-2):26-41
pubmed: 18467823
Mol Cell Biol. 1997 Sep;17(9):5559-70
pubmed: 9271431
Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):171-5
pubmed: 11136254
Genet Test. 2002 Fall;6(3):163-8
pubmed: 12490055
Nature. 2011 Sep 07;477(7363):179-84
pubmed: 21901007
Nat Rev Genet. 2007 Dec;8(12):950-62
pubmed: 18007651
Nat Rev Genet. 2006 Jul;7(7):552-64
pubmed: 16770338
Dis Markers. 2017;2017:7506976
pubmed: 28781416
Cytogenet Genome Res. 2016;150(2):118-127
pubmed: 28122375
Chromosome Res. 2008;16(1):41-56
pubmed: 18293104
Essays Biochem. 2019 Dec 20;63(6):757-771
pubmed: 31387943
J Hered. 1991 Sep-Oct;82(5):369-77
pubmed: 1658126
BMC Plant Biol. 2016 May 26;16(1):120
pubmed: 27230558
Nat Rev Mol Cell Biol. 2018 Apr;19(4):229-244
pubmed: 29235574
Nucleic Acids Res. 1988 Feb 25;16(4):1273-84
pubmed: 2831495
Bioessays. 1994 Apr;16(4):269-75
pubmed: 8031304
Proc Natl Acad Sci U S A. 2014 Nov 18;111(46):16460-5
pubmed: 25368194
Chromosome Res. 2006;14(6):649-55
pubmed: 16964571
Epigenetics Chromatin. 2015 Jan 15;8:3
pubmed: 25788984
Dev Cell. 2017 Aug 7;42(3):226-240.e6
pubmed: 28787590
BMC Evol Biol. 2014 Nov 25;14:233
pubmed: 25424548
Am J Hum Genet. 2002 Dec;71(6):1456-62
pubmed: 12424707
Front Genet. 2017 Aug 14;8:103
pubmed: 28855916
Genetica. 2004 Jul;121(3):315-25
pubmed: 15521430
Trends Genet. 2000 Oct;16(10):461-8
pubmed: 11050333
Hum Mol Genet. 1996 Sep;5(9):1279-88
pubmed: 8872467
PLoS One. 2011;6(11):e27239
pubmed: 22076140
Curr Opin Genet Dev. 2018 Apr;49:70-78
pubmed: 29579574
Genome Biol. 2006;7(12):R115
pubmed: 17156441
Sci Rep. 2017 Oct 10;7(1):12726
pubmed: 29018237
G3 (Bethesda). 2017 Aug 7;7(8):2831-2843
pubmed: 28659292
Cell. 2007 May 18;129(4):823-37
pubmed: 17512414
PLoS Genet. 2015 Aug 14;11(8):e1005466
pubmed: 26275223
J Cell Biol. 1989 Nov;109(5):1963-73
pubmed: 2808515
Mob DNA. 2014 Dec 31;5(1):30
pubmed: 25598847
J Cell Biol. 2014 Nov 10;207(3):335-49
pubmed: 25365994
Chromosome Res. 2015 Sep;23(3):415-20
pubmed: 26514350
Nat Commun. 2019 Jan 2;10(1):4
pubmed: 30602775
Genome Biol Evol. 2017 Oct 1;9(10):2668-2680
pubmed: 27492235
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8709-14
pubmed: 16731634
J Cell Sci. 2016 Oct 1;129(19):3541-3552
pubmed: 27528402
J Biol. 2009;8(7):66
pubmed: 19664183
Cytogenet Genome Res. 2009;126(1-2):12-20
pubmed: 20016153
Nat Rev Genet. 2018 Jul;19(7):453-467
pubmed: 29692413
Heredity (Edinb). 2010 Jun;104(6):543-51
pubmed: 19844270
Genomics. 1992 Dec;14(4):924-30
pubmed: 1478673
Genetics. 1987 Mar;115(3):553-67
pubmed: 3569882
J Appl Genet. 2015 Feb;56(1):133-45
pubmed: 25106509
Mol Biol Evol. 2020 May 1;37(5):1362-1375
pubmed: 31960929
Cell Cycle. 2017 Feb;16(3):235-236
pubmed: 27736298
Genes (Basel). 2017 Sep 18;8(9):
pubmed: 28926993
EMBO Mol Med. 2010 May;2(5):159-71
pubmed: 20432501
Elife. 2019 Nov 05;8:
pubmed: 31687931
Chromosome Res. 2003;11(7):641-8
pubmed: 14606626
J Cell Biol. 2016 Jul 18;214(2):133-41
pubmed: 27402954
Autoimmunity. 2008 May;41(4):253-71
pubmed: 18432406
Genome Res. 2017 May;27(5):697-708
pubmed: 28360231
Genes (Basel). 2019 Aug 20;10(8):
pubmed: 31434289
Int J Mol Sci. 2019 Mar 09;20(5):
pubmed: 30857296
Genetics. 2016 Sep;204(1):371-83
pubmed: 27449056
PLoS Genet. 2012;8(12):e1003136
pubmed: 23284301
Genome Res. 2017 May;27(5):709-721
pubmed: 28373483
Mol Biol Cell. 2004 Feb;15(2):543-51
pubmed: 14617804
Elife. 2017 Aug 01;6:
pubmed: 28760199
Cell Mol Life Sci. 2010 Jan;67(1):43-62
pubmed: 19727556
Nat Rev Genet. 2018 Jun;19(6):329-346
pubmed: 29599501
Proc Biol Sci. 2005 Oct 7;272(1576):2009-16
pubmed: 16191610
Genes (Basel). 2019 Mar 16;10(3):
pubmed: 30884847
Micron. 2008 Dec;39(8):1281-7
pubmed: 18440236
Nat Biotechnol. 2018 Apr;36(4):338-345
pubmed: 29431738
Plant Cell. 2019 Sep;31(9):2035-2051
pubmed: 31311836
Nat Struct Mol Biol. 2017 Nov;24(11):1000-1006
pubmed: 28967881
Trends Genet. 1997 Apr;13(4):141-5
pubmed: 9097724
Genet Mol Biol. 2009 Jan;32(1):58-68
pubmed: 21637647
J Transl Med. 2012 May 21;10:103
pubmed: 22613733
Chromosome Res. 2018 Sep;26(3):115-138
pubmed: 29974361
Nucleic Acids Res. 1993 May 11;21(9):2209-15
pubmed: 8502563
Nat Rev Genet. 2011 Nov 29;13(1):36-46
pubmed: 22124482
Sci Rep. 2019 Aug 2;9(1):11259
pubmed: 31375789
Curr Opin Genet Dev. 2005 Apr;15(2):177-84
pubmed: 15797200
J Mol Evol. 2002 Jun;54(6):774-83
pubmed: 12029359
Balkan J Med Genet. 2017 Jun 30;20(1):43-50
pubmed: 28924540
FEBS Lett. 1998 Dec 28;441(3):451-7
pubmed: 9891989
Hereditas. 1991;115(1):73-8
pubmed: 1774185
Genome Dyn. 2012;7:1-28
pubmed: 22759811
Trends Genet. 2018 Sep;34(9):666-681
pubmed: 29941292
Micron. 2008 Dec;39(8):1149-55
pubmed: 18602266
Chromosome Res. 2015 Sep;23(3):479-93
pubmed: 26293605
Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4325-4333
pubmed: 29686065
DNA Res. 2018 Apr 1;25(2):137-147
pubmed: 29096008
Curr Opin Genet Dev. 2009 Dec;19(6):607-12
pubmed: 19914058
Genome Biol. 2004;5(4):R23
pubmed: 15059256
Chromosome Res. 2018 Mar;26(1-2):5-23
pubmed: 29332159
Bio Protoc. 2018 Apr 05;8(7):e2792
pubmed: 34179295
Front Genet. 2018 Dec 21;9:674
pubmed: 30627137
Chromosome Res. 2014 Dec;22(4):517-32
pubmed: 25179263
Cytogenet Genome Res. 2018;156(1):35-44
pubmed: 30086546
Genome Dyn. 2012;7:153-69
pubmed: 22759818
DNA Res. 2017 Aug 1;24(4):377-385
pubmed: 28854689
PLoS Genet. 2009 Jun;5(6):e1000538
pubmed: 19557196
Chromosome Res. 2015 Sep;23(3):583-96
pubmed: 26293606
EMBO J. 2002 Nov 15;21(22):5955-9
pubmed: 12426367
Cytogenet Genome Res. 2015;145(1):59-67
pubmed: 25999143
Am J Hum Genet. 1985 May;37(3):524-32
pubmed: 2988334
Chromosome Res. 2019 Sep;27(3):237-252
pubmed: 30771198
Nat Rev Genet. 2019 Dec;20(12):760-772
pubmed: 31515540
Nucleic Acids Res. 2009 Oct;37(19):6340-54
pubmed: 19720732
Mamm Genome. 1996 Aug;7(8):593-7
pubmed: 8678980
Chromosome Res. 2018 Mar;26(1-2):25-43
pubmed: 29392473
Cytogenet Genome Res. 2004;107(1-2):119-22
pubmed: 15305066
Micron. 2013 Mar;46:27-34
pubmed: 23280178
PLoS Biol. 2019 May 14;17(5):e3000241
pubmed: 31086362
Science. 1999 Jul 16;285(5426):415-8
pubmed: 10411506
Genes (Basel). 2018 Dec 07;9(12):
pubmed: 30544645
Genet Res Int. 2012;2012:430136
pubmed: 22567387
G3 (Bethesda). 2012 Aug;2(8):931-41
pubmed: 22908042
Prog Mol Subcell Biol. 2011;51:95-118
pubmed: 21287135

Auteurs

Sandra Louzada (S)

Laboratory of Cytogenomics and Animal Genomics (CAG), Department of Genetics and Biotechnology (DGB), University of Trás-os-Montes and Alto Douro (UTAD), 5000-801 Vila Real, Portugal.
Biosystems and Integrative Sciences Institute (BioISI), Faculty of Sciences, University of Lisboa, 1749-016 Lisbon, Portugal.

Mariana Lopes (M)

Laboratory of Cytogenomics and Animal Genomics (CAG), Department of Genetics and Biotechnology (DGB), University of Trás-os-Montes and Alto Douro (UTAD), 5000-801 Vila Real, Portugal.
Biosystems and Integrative Sciences Institute (BioISI), Faculty of Sciences, University of Lisboa, 1749-016 Lisbon, Portugal.
ORCID: 0000-0002-3994-5090

Daniela Ferreira (D)

Laboratory of Cytogenomics and Animal Genomics (CAG), Department of Genetics and Biotechnology (DGB), University of Trás-os-Montes and Alto Douro (UTAD), 5000-801 Vila Real, Portugal.
Biosystems and Integrative Sciences Institute (BioISI), Faculty of Sciences, University of Lisboa, 1749-016 Lisbon, Portugal.
ORCID: 0000-0002-7094-4969

Filomena Adega (F)

Laboratory of Cytogenomics and Animal Genomics (CAG), Department of Genetics and Biotechnology (DGB), University of Trás-os-Montes and Alto Douro (UTAD), 5000-801 Vila Real, Portugal.
Biosystems and Integrative Sciences Institute (BioISI), Faculty of Sciences, University of Lisboa, 1749-016 Lisbon, Portugal.

Ana Escudeiro (A)

Laboratory of Cytogenomics and Animal Genomics (CAG), Department of Genetics and Biotechnology (DGB), University of Trás-os-Montes and Alto Douro (UTAD), 5000-801 Vila Real, Portugal.
Biosystems and Integrative Sciences Institute (BioISI), Faculty of Sciences, University of Lisboa, 1749-016 Lisbon, Portugal.

Margarida Gama-Carvalho (M)

Biosystems and Integrative Sciences Institute (BioISI), Faculty of Sciences, University of Lisboa, 1749-016 Lisbon, Portugal.
ORCID: 0000-0002-0365-6916

Raquel Chaves (R)

Laboratory of Cytogenomics and Animal Genomics (CAG), Department of Genetics and Biotechnology (DGB), University of Trás-os-Montes and Alto Douro (UTAD), 5000-801 Vila Real, Portugal.
Biosystems and Integrative Sciences Institute (BioISI), Faculty of Sciences, University of Lisboa, 1749-016 Lisbon, Portugal.

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Classifications MeSH

questionsmedicales.fr › Phénomènes biologiques › Adaptation biologique › Adaptation physiologique › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Eucaryotes › Animaux › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Structures de chromosome › Centromère › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Chromosomes › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Séquences répétées dispersées › Éléments transposables d'ADN › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Séquences répétées en tandem › ADN satellite › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Eucaryotes › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Évolution moléculaire › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Phénomènes génétiques › Réarrangement des gènes › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Structures de chromosome › Chromatine › Hétérochromatine › Decoding the Role of Satellite DNA in Genome...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Decoding the Role of Satellite DNA in Genome...