Machine learning for the prediction of sepsis: a systematic review and meta-analysis of diagnostic test accuracy.

Machine learning Meta-analysis Prediction Sepsis Septic shock Systematic review

Journal

Intensive care medicine
ISSN: 1432-1238
Titre abrégé: Intensive Care Med
Pays: United States
ID NLM: 7704851

Informations de publication

Date de publication:
03 2020
Historique:
received: 14 08 2019
accepted: 16 11 2019
pubmed: 23 1 2020
medline: 28 4 2021
entrez: 23 1 2020
Statut: ppublish

Résumé

Early clinical recognition of sepsis can be challenging. With the advancement of machine learning, promising real-time models to predict sepsis have emerged. We assessed their performance by carrying out a systematic review and meta-analysis. A systematic search was performed in PubMed, Embase.com and Scopus. Studies targeting sepsis, severe sepsis or septic shock in any hospital setting were eligible for inclusion. The index test was any supervised machine learning model for real-time prediction of these conditions. Quality of evidence was assessed using the Grading of Recommendations Assessment, Development and Evaluation (GRADE) methodology, with a tailored Quality Assessment of Diagnostic Accuracy Studies (QUADAS-2) checklist to evaluate risk of bias. Models with a reported area under the curve of the receiver operating characteristic (AUROC) metric were meta-analyzed to identify strongest contributors to model performance. After screening, a total of 28 papers were eligible for synthesis, from which 130 models were extracted. The majority of papers were developed in the intensive care unit (ICU, n = 15; 54%), followed by hospital wards (n = 7; 25%), the emergency department (ED, n = 4; 14%) and all of these settings (n = 2; 7%). For the prediction of sepsis, diagnostic test accuracy assessed by the AUROC ranged from 0.68-0.99 in the ICU, to 0.96-0.98 in-hospital and 0.87 to 0.97 in the ED. Varying sepsis definitions limit pooling of the performance across studies. Only three papers clinically implemented models with mixed results. In the multivariate analysis, temperature, lab values, and model type contributed most to model performance. This systematic review and meta-analysis show that on retrospective data, individual machine learning models can accurately predict sepsis onset ahead of time. Although they present alternatives to traditional scoring systems, between-study heterogeneity limits the assessment of pooled results. Systematic reporting and clinical implementation studies are needed to bridge the gap between bytes and bedside.

Identifiants

pubmed: 31965266
doi: 10.1007/s00134-019-05872-y
pii: 10.1007/s00134-019-05872-y
pmc: PMC7067741
doi:

Types de publication

Journal Article Meta-Analysis Review Systematic Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

383-400

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Auteurs

Lucas M Fleuren (LM)

Department of Intensive Care Medicine, Research VUmc Intensive Care (REVIVE), Amsterdam Medical Data Science (AMDS), Amsterdam Cardiovascular Sciences (ACS), Amsterdam Infection and Immunity Institute (AI&II), Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands. l.fleuren@amsterdamumc.nl.
Computational Intelligence Group, Department of Computer Science, VU Amsterdam, Amsterdam, The Netherlands. l.fleuren@amsterdamumc.nl.

Thomas L T Klausch (TLT)

Department of Epidemiology and Biostatistics, Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.

Charlotte L Zwager (CL)

Department of Intensive Care Medicine, Research VUmc Intensive Care (REVIVE), Amsterdam Medical Data Science (AMDS), Amsterdam Cardiovascular Sciences (ACS), Amsterdam Infection and Immunity Institute (AI&II), Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.

Linda J Schoonmade (LJ)

Medical Library, Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.

Tingjie Guo (T)

Department of Intensive Care Medicine, Research VUmc Intensive Care (REVIVE), Amsterdam Medical Data Science (AMDS), Amsterdam Cardiovascular Sciences (ACS), Amsterdam Infection and Immunity Institute (AI&II), Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.

Luca F Roggeveen (LF)

Department of Intensive Care Medicine, Research VUmc Intensive Care (REVIVE), Amsterdam Medical Data Science (AMDS), Amsterdam Cardiovascular Sciences (ACS), Amsterdam Infection and Immunity Institute (AI&II), Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.
Computational Intelligence Group, Department of Computer Science, VU Amsterdam, Amsterdam, The Netherlands.

Eleonora L Swart (EL)

Department of Pharmacy, Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.

Armand R J Girbes (ARJ)

Department of Intensive Care Medicine, Research VUmc Intensive Care (REVIVE), Amsterdam Medical Data Science (AMDS), Amsterdam Cardiovascular Sciences (ACS), Amsterdam Infection and Immunity Institute (AI&II), Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.

Patrick Thoral (P)

Department of Intensive Care Medicine, Research VUmc Intensive Care (REVIVE), Amsterdam Medical Data Science (AMDS), Amsterdam Cardiovascular Sciences (ACS), Amsterdam Infection and Immunity Institute (AI&II), Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.

Ari Ercole (A)

Division of Anaesthesia, University of Cambridge, Cambridge, UK.
Data Science Section, European Society of Intensive Care Medicine, Brussels, Belgium.

Mark Hoogendoorn (M)

Computational Intelligence Group, Department of Computer Science, VU Amsterdam, Amsterdam, The Netherlands.

Paul W G Elbers (PWG)

Department of Intensive Care Medicine, Research VUmc Intensive Care (REVIVE), Amsterdam Medical Data Science (AMDS), Amsterdam Cardiovascular Sciences (ACS), Amsterdam Infection and Immunity Institute (AI&II), Amsterdam UMC, location VUmc, VU Amsterdam, Amsterdam, The Netherlands.
Data Science Section, European Society of Intensive Care Medicine, Brussels, Belgium.

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Classifications MeSH