Reevaluating the Genetic Contribution of Monogenic Dilated Cardiomyopathy.
ExAC
Mendelian genetics
dilated cardiomyopathy
genetic testing
rare variant association testing
Journal
Circulation
ISSN: 1524-4539
Titre abrégé: Circulation
Pays: United States
ID NLM: 0147763
Informations de publication
Date de publication:
04 02 2020
04 02 2020
Historique:
pubmed:
28
1
2020
medline:
13
8
2020
entrez:
28
1
2020
Statut:
ppublish
Résumé
Dilated cardiomyopathy (DCM) is genetically heterogeneous, with >100 purported disease genes tested in clinical laboratories. However, many genes were originally identified based on candidate-gene studies that did not adequately account for background population variation. Here we define the frequency of rare variation in 2538 patients with DCM across protein-coding regions of 56 commonly tested genes and compare this to both 912 confirmed healthy controls and a reference population of 60 706 individuals to identify clinically interpretable genes robustly associated with dominant monogenic DCM. We used the TruSight Cardio sequencing panel to evaluate the burden of rare variants in 56 putative DCM genes in 1040 patients with DCM and 912 healthy volunteers processed with identical sequencing and bioinformatics pipelines. We further aggregated data from 1498 patients with DCM sequenced in diagnostic laboratories and the Exome Aggregation Consortium database for replication and meta-analysis. Truncating variants in In the largest sequenced DCM cohort yet described, we observe robust disease association with 12 genes, highlighting their importance in DCM and translating into high interpretability in diagnostic testing. The other genes analyzed here will need to be rigorously evaluated in ongoing curation efforts to determine their validity as Mendelian DCM genes but have limited value in diagnostic testing in DCM at present. This data will contribute to community gene curation efforts and will reduce erroneous and inconclusive findings in diagnostic testing.
Sections du résumé
BACKGROUND
Dilated cardiomyopathy (DCM) is genetically heterogeneous, with >100 purported disease genes tested in clinical laboratories. However, many genes were originally identified based on candidate-gene studies that did not adequately account for background population variation. Here we define the frequency of rare variation in 2538 patients with DCM across protein-coding regions of 56 commonly tested genes and compare this to both 912 confirmed healthy controls and a reference population of 60 706 individuals to identify clinically interpretable genes robustly associated with dominant monogenic DCM.
METHODS
We used the TruSight Cardio sequencing panel to evaluate the burden of rare variants in 56 putative DCM genes in 1040 patients with DCM and 912 healthy volunteers processed with identical sequencing and bioinformatics pipelines. We further aggregated data from 1498 patients with DCM sequenced in diagnostic laboratories and the Exome Aggregation Consortium database for replication and meta-analysis.
RESULTS
Truncating variants in
CONCLUSIONS
In the largest sequenced DCM cohort yet described, we observe robust disease association with 12 genes, highlighting their importance in DCM and translating into high interpretability in diagnostic testing. The other genes analyzed here will need to be rigorously evaluated in ongoing curation efforts to determine their validity as Mendelian DCM genes but have limited value in diagnostic testing in DCM at present. This data will contribute to community gene curation efforts and will reduce erroneous and inconclusive findings in diagnostic testing.
Identifiants
pubmed: 31983221
doi: 10.1161/CIRCULATIONAHA.119.037661
pmc: PMC7004454
doi:
Substances chimiques
Adaptor Proteins, Signal Transducing
0
Apoptosis Regulatory Proteins
0
BAG3 protein, human
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
387-398Subventions
Organisme : British Heart Foundation
ID : SP/10/10/28431
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UP_1102/19
Pays : United Kingdom
Organisme : British Heart Foundation
ID : RG/18/9/33887
Pays : United Kingdom
Organisme : Department of Health
ID : HICF-R6-373
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/M003191/1
Pays : United Kingdom
Organisme : British Heart Foundation
ID : RG/19/6/34387
Pays : United Kingdom
Organisme : British Heart Foundation
ID : RG/12/16/29939
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 200990/A/16/Z
Pays : United Kingdom
Organisme : British Heart Foundation
ID : NH/17/1/32725
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_U120085815
Pays : United Kingdom
Organisme : Medical Research Council
ID : MC_UP_1102/20
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 107469/Z/15/Z
Pays : United Kingdom
Références
Hum Mol Genet. 2016 Jan 15;25(2):254-65
pubmed: 26604136
Circulation. 2018 Sep 18;138(12):1195-1205
pubmed: 29959160
Genet Med. 2017 Feb;19(2):192-203
pubmed: 27532257
J Am Coll Cardiol. 2009 Sep 1;54(10):930-41
pubmed: 19712804
Nature. 2016 Aug 17;536(7616):285-91
pubmed: 27535533
Eur Heart J. 2010 Nov;31(22):2715-26
pubmed: 20823110
Circ Genom Precis Med. 2019 Feb;12(2):e002460
pubmed: 30681346
Biochim Biophys Acta. 2013 Apr;1833(4):833-9
pubmed: 23147248
Genet Med. 2014 Aug;16(8):601-8
pubmed: 24503780
Prog Pediatr Cardiol. 2014 Dec;37(1-2):13-18
pubmed: 25584016
Am J Hum Genet. 2018 Oct 4;103(4):522-534
pubmed: 30269813
Am J Hum Genet. 2011 Mar 11;88(3):273-82
pubmed: 21353195
Prog Pediatr Cardiol. 2011 Jan 1;31(1):39-47
pubmed: 21483645
Circ Cardiovasc Genet. 2015 Oct;8(5):643-52
pubmed: 26175529
J Cardiovasc Transl Res. 2016 Feb;9(1):3-11
pubmed: 26888179
J Am Coll Cardiol. 2012 Oct 16;60(16):1566-73
pubmed: 22999724
Nat Rev Cardiol. 2013 Sep;10(9):531-47
pubmed: 23900355
Circ Res. 2017 Sep 15;121(7):731-748
pubmed: 28912180
Sci Transl Med. 2015 Jan 14;7(270):270ra6
pubmed: 25589632
Nat Genet. 2002 Feb;30(2):201-4
pubmed: 11788824
PLoS One. 2013 Apr 29;8(4):e62856
pubmed: 23638157
J Am Coll Cardiol. 2016 Dec 6;68(22):2440-2451
pubmed: 27908349
Eur Heart J. 2017 Dec 7;38(46):3461-3468
pubmed: 28082330
Hum Mol Genet. 2015 May 15;24(10):2757-63
pubmed: 25650408
JACC Cardiovasc Imaging. 2015 Nov;8(11):1260-9
pubmed: 26476505
Genome Med. 2019 Jan 29;11(1):5
pubmed: 30696458
Science. 2015 Aug 28;349(6251):982-6
pubmed: 26315439