Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies.
Titin
cardiomyopathies
clinical interpretation
data sharing
skeletal muscle disorders
Journal
Journal of neuromuscular diseases
ISSN: 2214-3602
Titre abrégé: J Neuromuscul Dis
Pays: Netherlands
ID NLM: 101649948
Informations de publication
Date de publication:
2020
2020
Historique:
pubmed:
11
2
2020
medline:
18
11
2020
entrez:
11
2
2020
Statut:
ppublish
Résumé
Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies. To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants. We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort. We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified. We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases.
Sections du résumé
BACKGROUND
BACKGROUND
Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies.
OBJECTIVE
OBJECTIVE
To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants.
METHODS
METHODS
We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort.
RESULTS
RESULTS
We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified.
CONCLUSIONS
CONCLUSIONS
We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases.
Identifiants
pubmed: 32039858
pii: JND190423
doi: 10.3233/JND-190423
doi:
Substances chimiques
Connectin
0
TTN protein, human
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM