Inserting Small Molecules across Membrane Mixtures: Insight from the Potential of Mean Force.


Journal

Biophysical journal
ISSN: 1542-0086
Titre abrégé: Biophys J
Pays: United States
ID NLM: 0370626

Informations de publication

Date de publication:
24 03 2020
Historique:
received: 11 10 2019
revised: 05 01 2020
accepted: 27 01 2020
pubmed: 23 2 2020
medline: 15 5 2021
entrez: 21 2 2020
Statut: ppublish

Résumé

Small solutes have been shown to alter the lateral organization of cell membranes and reconstituted phospholipid bilayers; however, the mechanisms by which these changes happen are still largely unknown. Traditionally, both experiment and simulation studies have been restricted to testing only a few compounds at a time, failing to identify general molecular descriptors or chemical properties that would allow extrapolating beyond the subset of considered solutes. In this work, we probe the competing energetics of inserting a solute in different membrane environments by means of the potential of mean force. We show that these calculations can be used as a computationally efficient proxy to establish whether a solute will stabilize or destabilize domain phase separation. Combined with umbrella-sampling simulations and coarse-grained molecular dynamics simulations, we are able to screen solutes across a wide range of chemistries and polarities. Our results indicate that for the system under consideration, preferential partitioning and therefore effectiveness in altering membrane phase separation are strictly linked to the location of insertion in the bilayer (i.e., midplane or interface). Our approach represents a fast and simple tool for obtaining structural and thermodynamic insight into the partitioning of small molecules between lipid domains and its relation to phase separation, ultimately providing a platform for identifying the key determinants of this process.

Identifiants

pubmed: 32075746
pii: S0006-3495(20)30114-4
doi: 10.1016/j.bpj.2020.01.039
pmc: PMC7091563
pii:
doi:

Substances chimiques

Lipid Bilayers 0
Phospholipids 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1321-1332

Informations de copyright

Copyright © 2020 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Auteurs

Alessia Centi (A)

Max Planck Institute for Polymer Research, Mainz, Germany.

Arghya Dutta (A)

Max Planck Institute for Polymer Research, Mainz, Germany.

Sapun H Parekh (SH)

Max Planck Institute for Polymer Research, Mainz, Germany; Department of Biomedical Engineering, University of Texas at Austin, Austin, Texas.

Tristan Bereau (T)

Max Planck Institute for Polymer Research, Mainz, Germany. Electronic address: bereau@mpip-mainz.mpg.de.

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