Natural Language Processing in Dutch Free Text Radiology Reports: Challenges in a Small Language Area Staging Pulmonary Oncology.

Classification system Free text Machine learning Natural language processing Radiology Reporting

Journal

Journal of digital imaging
ISSN: 1618-727X
Titre abrégé: J Digit Imaging
Pays: United States
ID NLM: 9100529

Informations de publication

Date de publication:
08 2020
Historique:
pubmed: 23 2 2020
medline: 17 8 2021
entrez: 21 2 2020
Statut: ppublish

Résumé

Reports are the standard way of communication between the radiologist and the referring clinician. Efforts are made to improve this communication by, for instance, introducing standardization and structured reporting. Natural Language Processing (NLP) is another promising tool which can improve and enhance the radiological report by processing free text. NLP as such adds structure to the report and exposes the information, which in turn can be used for further analysis. This paper describes pre-processing and processing steps and highlights important challenges to overcome in order to successfully implement a free text mining algorithm using NLP tools and machine learning in a small language area, like Dutch. A rule-based algorithm was constructed to classify T-stage of pulmonary oncology from the original free text radiological report, based on the items tumor size, presence and involvement according to the 8th TNM classification system. PyContextNLP, spaCy and regular expressions were used as tools to extract the correct information and process the free text. Overall accuracy of the algorithm for evaluating T-stage was 0,83 in the training set and 0,87 in the validation set, which shows that the approach in this pilot study is promising. Future research with larger datasets and external validation is needed to be able to introduce more machine learning approaches and perhaps to reduce required input efforts of domain-specific knowledge. However, a hybrid NLP approach will probably achieve the best results.

Identifiants

pubmed: 32076924
doi: 10.1007/s10278-020-00327-z
pii: 10.1007/s10278-020-00327-z
pmc: PMC7522136
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1002-1008

Références

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Auteurs

J Martijn Nobel (JM)

Department of Radiology and Nuclear Medicine, Maastricht University Medical Center+, Postbox 5800, 6202, Maastricht, AZ, Netherlands. martijn.nobel@mumc.nl.
School of Health Professions Education, Maastricht University, Maastricht, Netherlands. martijn.nobel@mumc.nl.

Sander Puts (S)

Department of Radiation Oncology (MAASTRO), GROW School for Oncology and Developmental Biology, Maastricht University Medical Center+, Maastricht, Netherlands.

Frans C H Bakers (FCH)

Department of Radiology and Nuclear Medicine, Maastricht University Medical Center+, Postbox 5800, 6202, Maastricht, AZ, Netherlands.

Simon G F Robben (SGF)

Department of Radiology and Nuclear Medicine, Maastricht University Medical Center+, Postbox 5800, 6202, Maastricht, AZ, Netherlands.
School of Health Professions Education, Maastricht University, Maastricht, Netherlands.

André L A J Dekker (ALAJ)

Department of Radiation Oncology (MAASTRO), GROW School for Oncology and Developmental Biology, Maastricht University Medical Center+, Maastricht, Netherlands.

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