A machine learning approach on multiscale texture analysis for breast microcalcification diagnosis.

Computer-aided diagnosis Digital mammograms Feature selection Haar wavelet transform Microcalcifications Minimum eigenvalue algorithm Random forest SURF

Journal

BMC bioinformatics
ISSN: 1471-2105
Titre abrégé: BMC Bioinformatics
Pays: England
ID NLM: 100965194

Informations de publication

Date de publication:
11 Mar 2020
Historique:
entrez: 14 3 2020
pubmed: 14 3 2020
medline: 3 6 2020
Statut: epublish

Résumé

Screening programs use mammography as primary diagnostic tool for detecting breast cancer at an early stage. The diagnosis of some lesions, such as microcalcifications, is still difficult today for radiologists. In this paper, we proposed an automatic binary model for discriminating tissue in digital mammograms, as support tool for the radiologists. In particular, we compared the contribution of different methods on the feature selection process in terms of the learning performances and selected features. For each ROI, we extracted textural features on Haar wavelet decompositions and also interest points and corners detected by using Speeded Up Robust Feature (SURF) and Minimum Eigenvalue Algorithm (MinEigenAlg). Then a Random Forest binary classifier is trained on a subset of a sub-set features selected by two different kinds of feature selection techniques, such as filter and embedded methods. We tested the proposed model on 260 ROIs extracted from digital mammograms of the BCDR public database. The best prediction performance for the normal/abnormal and benign/malignant problems reaches a median AUC value of 98.16% and 92.08%, and an accuracy of 97.31% and 88.46%, respectively. The experimental result was comparable with related work performance. The best performing result obtained with embedded method is more parsimonious than the filter one. The SURF and MinEigen algorithms provide a strong informative content useful for the characterization of microcalcification clusters.

Sections du résumé

BACKGROUND BACKGROUND
Screening programs use mammography as primary diagnostic tool for detecting breast cancer at an early stage. The diagnosis of some lesions, such as microcalcifications, is still difficult today for radiologists. In this paper, we proposed an automatic binary model for discriminating tissue in digital mammograms, as support tool for the radiologists. In particular, we compared the contribution of different methods on the feature selection process in terms of the learning performances and selected features.
RESULTS RESULTS
For each ROI, we extracted textural features on Haar wavelet decompositions and also interest points and corners detected by using Speeded Up Robust Feature (SURF) and Minimum Eigenvalue Algorithm (MinEigenAlg). Then a Random Forest binary classifier is trained on a subset of a sub-set features selected by two different kinds of feature selection techniques, such as filter and embedded methods. We tested the proposed model on 260 ROIs extracted from digital mammograms of the BCDR public database. The best prediction performance for the normal/abnormal and benign/malignant problems reaches a median AUC value of 98.16% and 92.08%, and an accuracy of 97.31% and 88.46%, respectively. The experimental result was comparable with related work performance.
CONCLUSIONS CONCLUSIONS
The best performing result obtained with embedded method is more parsimonious than the filter one. The SURF and MinEigen algorithms provide a strong informative content useful for the characterization of microcalcification clusters.

Identifiants

pubmed: 32164532
doi: 10.1186/s12859-020-3358-4
pii: 10.1186/s12859-020-3358-4
pmc: PMC7069158
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

91

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Auteurs

Annarita Fanizzi (A)

I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", viale O. Flacco 65, Bari, Italy.

Teresa M A Basile (TMA)

Dip. Interateneo di Fisica "M. Merlin", Università degli Studi di Bari "A. Moro", via G. Amendola 173, Bari, Italy.
INFN - Istituto Nazionale di Fisica Nucleare, sezione di Bari, via G. Amendola 173, Bari, Italy.

Liliana Losurdo (L)

I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", viale O. Flacco 65, Bari, Italy. lilianalosurdo@gmail.com.

Roberto Bellotti (R)

Dip. Interateneo di Fisica "M. Merlin", Università degli Studi di Bari "A. Moro", via G. Amendola 173, Bari, Italy.
INFN - Istituto Nazionale di Fisica Nucleare, sezione di Bari, via G. Amendola 173, Bari, Italy.

Ubaldo Bottigli (U)

Dip. di Scienze Fisiche, della Terra e dell'Ambiente, Università degli Studi di Siena, strada Laterina 2, Siena, Italy.

Rosalba Dentamaro (R)

I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", viale O. Flacco 65, Bari, Italy.

Vittorio Didonna (V)

I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", viale O. Flacco 65, Bari, Italy.

Alfonso Fausto (A)

Dip. di Diagnostica delle Immagini, Ospedale Universitario di Siena, viale Bracci 16, Siena, Italy.

Raffaella Massafra (R)

I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", viale O. Flacco 65, Bari, Italy.

Marco Moschetta (M)

Dip. Interdisciplinare di Medicina, Università degli Studi di Bari "A. Moro", piazza G. Cesare 11, Bari, Italy.

Ondina Popescu (O)

I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", viale O. Flacco 65, Bari, Italy.

Pasquale Tamborra (P)

I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", viale O. Flacco 65, Bari, Italy.

Sabina Tangaro (S)

INFN - Istituto Nazionale di Fisica Nucleare, sezione di Bari, via G. Amendola 173, Bari, Italy.

Daniele La Forgia (D)

I.R.C.C.S. Istituto Tumori "Giovanni Paolo II", viale O. Flacco 65, Bari, Italy.

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