Semi-Supervised Nests of Melanocytes Segmentation Method Using Convolutional Autoencoders.


Journal

Sensors (Basel, Switzerland)
ISSN: 1424-8220
Titre abrégé: Sensors (Basel)
Pays: Switzerland
ID NLM: 101204366

Informations de publication

Date de publication:
11 Mar 2020
Historique:
received: 29 12 2019
revised: 28 02 2020
accepted: 04 03 2020
entrez: 15 3 2020
pubmed: 15 3 2020
medline: 5 1 2021
Statut: epublish

Résumé

In this research, we present a semi-supervised segmentation solution using convolutional autoencoders to solve the problem of segmentation tasks having a small number of ground-truth images. We evaluate the proposed deep network architecture for the detection of nests of nevus cells in histopathological images of skin specimens is an important step in dermatopathology. The diagnostic criteria based on the degree of uniformity and symmetry of border irregularities are particularly vital in dermatopathology, in order to distinguish between benign and malignant skin lesions. However, to the best of our knowledge, it is the first described method to segment the nests region. The novelty of our approach is not only the area of research, but, furthermore, we address a problem with a small ground-truth dataset. We propose an effective computer-vision based deep learning tool that can perform the nests segmentation based on an autoencoder architecture with two learning steps. Experimental results verified the effectiveness of the proposed approach and its ability to segment nests areas with Dice similarity coefficient 0.81, sensitivity 0.76, and specificity 0.94, which is a state-of-the-art result.

Identifiants

pubmed: 32168748
pii: s20061546
doi: 10.3390/s20061546
pmc: PMC7146382
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Narodowe Centrum Nauki
ID : 2016/23/N/ST7/01361
Organisme : Research subsidy of the AGH University of Science and Technology
ID : 16.16.120.773

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Auteurs

Dariusz Kucharski (D)

Department of Automatic Control and Robotics, AGH University of Science and Technology, al. A. Mickiewicza 30, 30-059 Krakow, Poland.

Pawel Kleczek (P)

Department of Automatic Control and Robotics, AGH University of Science and Technology, al. A. Mickiewicza 30, 30-059 Krakow, Poland.

Joanna Jaworek-Korjakowska (J)

Department of Automatic Control and Robotics, AGH University of Science and Technology, al. A. Mickiewicza 30, 30-059 Krakow, Poland.

Grzegorz Dyduch (G)

Chair of Pathomorphology, Jagiellonian University Medical College, ul. Grzegorzecka 16, 31-531 Krakow, Poland.

Marek Gorgon (M)

Department of Automatic Control and Robotics, AGH University of Science and Technology, al. A. Mickiewicza 30, 30-059 Krakow, Poland.

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