Loss of H3K36 Methyltransferase SETD2 Impairs V(D)J Recombination during Lymphoid Development.

Biological Sciences Cell Biology Immunology Molecular Biology

Journal

iScience
ISSN: 2589-0042
Titre abrégé: iScience
Pays: United States
ID NLM: 101724038

Informations de publication

Date de publication:
27 Mar 2020
Historique:
received: 07 10 2019
revised: 25 01 2020
accepted: 21 02 2020
pubmed: 15 3 2020
medline: 15 3 2020
entrez: 15 3 2020
Statut: ppublish

Résumé

Repair of DNA double-stranded breaks (DSBs) during lymphocyte development is essential for V(D)J recombination and forms the basis of immunoglobulin variable region diversity. Understanding of this process in lymphogenesis has historically been centered on the study of RAG1/2 recombinases and a set of classical non-homologous end-joining factors. Much less has been reported regarding the role of chromatin modifications on this process. Here, we show a role for the non-redundant histone H3 lysine methyltransferase, Setd2, and its modification of lysine-36 trimethylation (H3K36me3), in the processing and joining of DNA ends during V(D)J recombination. Loss leads to mis-repair of Rag-induced DNA DSBs, especially when combined with loss of Atm kinase activity. Furthermore, loss reduces immune repertoire and a severe block in lymphogenesis as well as causes post-mitotic neuronal apoptosis. Together, these studies are suggestive of an important role of Setd2/H3K36me3 in these two mammalian developmental processes that are influenced by double-stranded break repair.

Identifiants

pubmed: 32169821
pii: S2589-0042(20)30125-5
doi: 10.1016/j.isci.2020.100941
pmc: PMC7066224
pii:
doi:

Types de publication

Journal Article

Langues

eng

Pagination

100941

Subventions

Organisme : NIAID NIH HHS
ID : R01 AI047829
Pays : United States
Organisme : NCI NIH HHS
ID : P01 CA066996
Pays : United States
Organisme : NCI NIH HHS
ID : P30 CA008748
Pays : United States
Organisme : NCI NIH HHS
ID : R01 CA176745
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI074953
Pays : United States
Organisme : NCI NIH HHS
ID : F30 CA189740
Pays : United States

Informations de copyright

Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Interests S.A.A. has been a consultant and/or shareholder for Epizyme Inc, Imago Biosciences, Cyteir Therapeutics, C4 Therapeutics, Syros Pharmaceuticals, OxStem Oncology, Accent Therapeutics, and Mana Therapeutics. S.A.A. has received research support from Janssen, Novartis, and AstraZeneca. S.H.C. is currently an employee at Beam Therapeutics. The authors have no additional financial interests.

Références

Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10619-24
pubmed: 27601633
Nat Genet. 2019 Mar;51(3):560-567
pubmed: 30742113
J Med Genet. 2016 Nov;53(11):743-751
pubmed: 27317772
Nature. 2000 Mar 30;404(6777):510-4
pubmed: 10761921
Cell Res. 2018 Apr;28(4):476-490
pubmed: 29531312
Nature. 2006 Jul 27;442(7101):466-70
pubmed: 16799570
EMBO J. 1998 Sep 15;17(18):5497-508
pubmed: 9736627
Mol Cell. 2018 Jul 19;71(2):332-342.e8
pubmed: 30017584
Cell Rep. 2014 Jun 26;7(6):2006-18
pubmed: 24931610
Essays Biochem. 2010 Sep 20;48(1):221-43
pubmed: 20822496
Nature. 2007 Sep 27;449(7161):483-6
pubmed: 17898768
Mol Cell. 2008 Sep 5;31(5):631-40
pubmed: 18775323
Mol Cell. 2016 Sep 1;63(5):898-911
pubmed: 27477910
Cell. 2003 Aug 8;114(3):371-383
pubmed: 12914701
Cell Death Dis. 2015 Apr 09;6:e1716
pubmed: 25855964
Cell. 1998 Dec 23;95(7):891-902
pubmed: 9875844
Nat Biotechnol. 2017 Oct 11;35(10):908-911
pubmed: 29020005
Nat Commun. 2016 Feb 02;7:10529
pubmed: 26833222
EMBO J. 2001 Nov 15;20(22):6394-403
pubmed: 11707410
Cell. 2010 Apr 30;141(3):419-31
pubmed: 20398922
Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):1904-1909
pubmed: 28174273
Nat Genet. 2014 Mar;46(3):287-93
pubmed: 24509477
Nat Genet. 2017 Mar 30;49(4):482-483
pubmed: 28358132
Annu Rev Genet. 2011;45:167-202
pubmed: 21854230
Proc Natl Acad Sci U S A. 2000 Mar 14;97(6):2668-73
pubmed: 10716994
PLoS One. 2015 Apr 17;10(4):e0124661
pubmed: 25884630
Nat Commun. 2019 Jul 26;10(1):3353
pubmed: 31350389
Genes Dev. 1995 Oct 1;9(19):2409-20
pubmed: 7557392
Proc Natl Acad Sci U S A. 2006 May 9;103(19):7378-83
pubmed: 16670198
Nat Struct Mol Biol. 2012 Dec;19(12):1266-72
pubmed: 23142980
Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):540-5
pubmed: 21187428
Cell. 2004 Jun 11;117(6):787-800
pubmed: 15186779
Cell. 1992 Sep 18;70(6):983-91
pubmed: 1356077
J Exp Med. 2017 May 1;214(5):1371-1386
pubmed: 28424246
Blood. 2017 Dec 14;130(24):2631-2641
pubmed: 29018079
Cell. 2013 Apr 25;153(3):590-600
pubmed: 23622243
Nature. 2007 Dec 13;450(7172):1106-10
pubmed: 18033247
Nature. 2000 Apr 20;404(6780):897-900
pubmed: 10786799
Curr Top Microbiol Immunol. 2012;356:65-89
pubmed: 21695632
DNA Repair (Amst). 2008 Jul 1;7(7):1051-60
pubmed: 18458002
J Immunol. 2006 Jun 1;176(11):6831-8
pubmed: 16709843
Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1880-5
pubmed: 19164512
Science. 2016 May 13;352(6287):844-9
pubmed: 27174990
Biol Open. 2012 Dec 15;1(12):1200-3
pubmed: 23259054
Nucleic Acids Res. 1997 Mar 15;25(6):1317-8
pubmed: 9092650
Cell. 2013 Jan 31;152(3):417-29
pubmed: 23374339
Nat Biotechnol. 2018 Nov 9;36(11):1034
pubmed: 30412202
Immunity. 2006 Jul;25(1):31-41
pubmed: 16860755
Cancer Discov. 2017 Apr;7(4):369-379
pubmed: 28122867
J Immunol. 2016 Oct 15;197(8):3165-3174
pubmed: 27574300
Nature. 2011 Jan 13;469(7329):250-4
pubmed: 21160472
Leukemia. 2016 Nov;30(11):2179-2186
pubmed: 27282254
Nat Neurosci. 2016 Sep;19(9):1194-6
pubmed: 27479843
Nat Struct Mol Biol. 2014 Apr;21(4):366-74
pubmed: 24658350
Blood. 2016 Aug 4;128(5):650-9
pubmed: 27281794
Nat Rev Mol Cell Biol. 2012 Jan 23;13(2):115-26
pubmed: 22266761
Haematologica. 2018 Jul;103(7):1110-1123
pubmed: 29650642
Neuron. 2015 Dec 2;88(5):910-917
pubmed: 26637798
Int J Hematol. 2014 Sep;100(3):230-7
pubmed: 25060705
J Exp Med. 2009 Nov 23;206(12):2625-39
pubmed: 19887394
J Exp Med. 2009 May 11;206(5):1019-27
pubmed: 19414554
Nucleic Acids Res. 2008 May;36(9):2939-47
pubmed: 18385154
Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2956-61
pubmed: 20133625
Genes Dev. 1993 Dec;7(12B):2520-32
pubmed: 8276236
Proc Natl Acad Sci U S A. 2006 Sep 12;103(37):13789-94
pubmed: 16940357
Acta Neuropathol. 2013 May;125(5):659-69
pubmed: 23417712
Mol Cell. 2000 Jun;5(6):993-1002
pubmed: 10911993
Cell. 2002 Apr;109 Suppl:S45-55
pubmed: 11983152
DNA Repair (Amst). 2014 Apr;16:11-22
pubmed: 24674624
Cell Death Differ. 2018 Feb;25(2):444-452
pubmed: 29077092
Nature. 2012 Jan 11;481(7380):157-63
pubmed: 22237106

Auteurs

S Haihua Chu (SH)

Department of Pediatric Oncology, Dana Farber Cancer Institute, and Division of Hematology/Oncology, Boston Children's Hospital, 450 Brookline Avenue, Boston, MA 02215-5450, USA.

Jonathan R Chabon (JR)

Department of Pediatric Oncology, Dana Farber Cancer Institute, and Division of Hematology/Oncology, Boston Children's Hospital, 450 Brookline Avenue, Boston, MA 02215-5450, USA.

Chloe N Matovina (CN)

Department of Pediatric Oncology, Dana Farber Cancer Institute, and Division of Hematology/Oncology, Boston Children's Hospital, 450 Brookline Avenue, Boston, MA 02215-5450, USA.

Janna C Minehart (JC)

New York University School of Medicine, New York, NY, USA.

Bo-Ruei Chen (BR)

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.

Jian Zhang (J)

Center for Computational Biology, Beijing Institute of Basic Medical Sciences, Beijing, China; Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health, Boston, MA, USA.

Vipul Kumar (V)

Howard Hughes Medical Institute, Department of Pediatrics, Department of Genetics, Harvard Medical School, Boston, MA, USA; Harvard-MIT MD-PhD Program, Harvard Medical School, Boston, MA, USA.

Yijun Xiong (Y)

Department of Pediatric Oncology, Dana Farber Cancer Institute, and Division of Hematology/Oncology, Boston Children's Hospital, 450 Brookline Avenue, Boston, MA 02215-5450, USA.

Elsa Callen (E)

Laboratory of Genome Integrity, National Cancer Institute National Institutes of Health, Bethesda, MD, USA.

Putzer J Hung (PJ)

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA; Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.

Zhaohui Feng (Z)

Department of Pediatric Oncology, Dana Farber Cancer Institute, and Division of Hematology/Oncology, Boston Children's Hospital, 450 Brookline Avenue, Boston, MA 02215-5450, USA.

Richard P Koche (RP)

Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

X Shirley Liu (XS)

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health, Boston, MA, USA.

Jayanta Chaudhuri (J)

Immunology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA; Immunology and Microbial Pathogenesis Program, Weill Cornell Graduate School of Medical Sciences, New York, NY, USA.

Andre Nussenzweig (A)

Laboratory of Genome Integrity, National Cancer Institute National Institutes of Health, Bethesda, MD, USA.

Barry P Sleckman (BP)

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.

Scott A Armstrong (SA)

Department of Pediatric Oncology, Dana Farber Cancer Institute, and Division of Hematology/Oncology, Boston Children's Hospital, 450 Brookline Avenue, Boston, MA 02215-5450, USA. Electronic address: scott_armstrong@dfci.harvard.edu.

Classifications MeSH