Wikidata as a knowledge graph for the life sciences.
computational biology
data mining
drug repurposing
knowledge graphs
none
science forum
systems biology
wikidata
Journal
eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614
Informations de publication
Date de publication:
17 03 2020
17 03 2020
Historique:
received:
09
10
2019
accepted:
28
02
2020
entrez:
18
3
2020
pubmed:
18
3
2020
medline:
15
4
2021
Statut:
epublish
Résumé
Wikidata is a community-maintained knowledge base that has been assembled from repositories in the fields of genomics, proteomics, genetic variants, pathways, chemical compounds, and diseases, and that adheres to the FAIR principles of findability, accessibility, interoperability and reusability. Here we describe the breadth and depth of the biomedical knowledge contained within Wikidata, and discuss the open-source tools we have built to add information to Wikidata and to synchronize it with source databases. We also demonstrate several use cases for Wikidata, including the crowdsourced curation of biomedical ontologies, phenotype-based diagnosis of disease, and drug repurposing.
Identifiants
pubmed: 32180547
doi: 10.7554/eLife.52614
pii: 52614
pmc: PMC7077981
doi:
pii:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NIAID NIH HHS
ID : R01 AI126785
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG003751
Pays : United States
Organisme : NIGMS NIH HHS
ID : P41 GM103504
Pays : United States
Organisme : NIGMS NIH HHS
ID : U54 GM114833
Pays : United States
Organisme : NCI NIH HHS
ID : U01 CA209936
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM089820
Pays : United States
Organisme : NHGRI NIH HHS
ID : P41 HG003751
Pays : United States
Organisme : NHGRI NIH HHS
ID : R00 HG007940
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM100039
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR002550
Pays : United States
Organisme : NCI NIH HHS
ID : U24 CA237719
Pays : United States
Informations de copyright
© 2020, Waagmeester et al.
Déclaration de conflit d'intérêts
AW, GS, SB, BG, MG, OG, KH, HH, TH, KH, SK, MM, MM, DM, EM, AP, TP, AR, NQ, LS, TS, DS, RS, KT, GT, RT, SU, EW, CW, AS No competing interests declared
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