Thomas Shafee

Affiliations

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, 3086, Australia; Department of Animal, Plant, and Soil Science, AgriBio, La Trobe University, Melbourne, Victoria, 3086, Australia. Electronic address: T.Shafee@LaTrobe.edu.au.

Publications (16)

Mapping the chemical and sequence space of the ShKT superfamily.

Toxicon : official journal of the International Society on Toxinology

Avec: Thomas Shafee , Michela L Mitchell , Raymond S Norton

Standardised data on initiatives-STARDIT: Beta version.

Research involvement and engagement

Avec: Jack S Nunn , Thomas Shafee , Steven Chang , Richard Stephens , Jim Elliott , Sandy Oliver , Denny John , Maureen Smith , Neil Orr , Jennifer Preston , Josephine Borthwick , Thijs van Vlijmen , James Ansell , Francois Houyez , Maria Sharmila Alina de Sousa , Roan D Plotz , Jessica L Oliver , Yaela Golumbic , Rona Macniven , Samuel Wines , Ann Borda , Håkon da Silva Hyldmo , Pen-Yuan Hsing , Lena Denis , Carolyn Thompson

Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family.

BMC biology

Avec: Lauren M Ashwood , Khaled A Elnahriry , Zachary K Stewart , Thomas Shafee , Muhammad Umair Naseem , Tibor G Szanto , Chloé A van der Burg , Hayden L Smith , Joachim M Surm , Eivind A B Undheim , Bruno Madio , Brett R Hamilton , Shaodong Guo , Dorothy C C Wai , Victoria L Coyne , Matthew J Phillips , Kevin J Dudley , David A Hurwood , Gyorgy Panyi , Glenn F King , Ana Pavasovic , Raymond S Norton , Peter J Prentis

Glycosyl transferase GT2 genes mediate the biosynthesis of an unusual (1,3;1,4)-β-glucan exopolysaccharide in the bacterium Sarcina ventriculi.

Molecular microbiology

Avec: Edwin R Lampugnani , Kris Ford , Yin Ying Ho , Allison van de Meene , Jelle Lahnstein , Hwei-Ting Tan , Rachel A Burton , Geoffrey B Fincher , Thomas Shafee , Antony Bacic , Jochen Zimmer , Xiaohui Xing , Vincent Bulone , Monika S Doblin , Eric M Roberts

Distinct functions of FASCILIN-LIKE ARABINOGALACTAN PROTEINS relate to domain structure.

Plant physiology

Avec: Yingxuan Ma , Thomas Shafee , Asha M Mudiyanselage , Julian Ratcliffe , Colleen P MacMillan , Shawn D Mansfield , Antony Bacic , Kim L Johnson

Arabinogalactan-proteins of Zostera marina L. contain unique glycan structures and provide insight into adaption processes to saline environments.

Scientific reports

Avec: Lukas Pfeifer , Thomas Shafee , Kim L Johnson , Antony Bacic , Birgit Classen

A quantitative map of protein sequence space for the cis-defensin superfamily.

Bioinformatics (Oxford, England)

Avec: Thomas Shafee , Marilyn A Anderson

Wikidata: A large-scale collaborative ontological medical database.

Journal of biomedical informatics

Avec: Houcemeddine Turki , Thomas Shafee , Mohamed Ali Hadj Taieb , Mohamed Ben Aouicha , Denny Vrandečić , Diptanshu Das , Helmi Hamdi

Differences in protein structural regions that impact functional specificity in GT2 family β-glucan synthases.

PloS one

Avec: Daniel P Oehme , Thomas Shafee , Matthew T Downton , Antony Bacic , Monika S Doblin

Using logical constraints to validate statistical information about disease outbreaks in collaborative knowledge graphs: the case of COVID-19 epidemiology in Wikidata.

PeerJ. Computer science

Avec: Houcemeddine Turki , Dariusz Jemielniak , Mohamed A Hadj Taieb , Jose E Labra Gayo , Mohamed Ben Aouicha , Mus'ab Banat , Thomas Shafee , Eric Prud'hommeaux , Tiago Lubiana , Diptanshu Das , Daniel Mietchen

Evolution of cnidarian trans-defensins: Sequence, structure and exploration of chemical space.

Proteins

Avec: Michela L Mitchell , Thomas Shafee , Anthony T Papenfuss , Raymond S Norton

Wikidata as a knowledge graph for the life sciences.

eLife

Avec: Andra Waagmeester , Gregory Stupp , Sebastian Burgstaller-Muehlbacher , Benjamin M Good , Malachi Griffith , Obi L Griffith , Kristina Hanspers , Henning Hermjakob , Toby S Hudson , Kevin Hybiske , Sarah M Keating , Magnus Manske , Michael Mayers , Daniel Mietchen , Elvira Mitraka , Alexander R Pico , Timothy Putman , Anders Riutta , Nuria Queralt-Rosinach , Lynn M Schriml , Thomas Shafee , Denise Slenter , Ralf Stephan , Katherine Thornton , Ginger Tsueng , Roger Tu , Sabah Ul-Hasan , Egon Willighagen , Chunlei Wu , Andrew I Su

Hyperpolarisation of Mitochondrial Membranes Is a Critical Component of the Antifungal Mechanism of the Plant Defensin, Ppdef1.

Journal of fungi (Basel, Switzerland)

Avec: Kathy Parisi , James A McKenna , Rohan Lowe , Karen S Harris , Thomas Shafee , Rosemary Guarino , Eunice Lee , Nicole L van der Weerden , Mark R Bleackley , Marilyn A Anderson

Evolution of Sequence-Diverse Disordered Regions in a Protein Family: Order within the Chaos.

Molecular biology and evolution

Avec: Thomas Shafee , Antony Bacic , Kim Johnson

A Centipede Toxin Family Defines an Ancient Class of CSαβ Defensins.

Structure (London, England : 1993)

Avec: Thomas S Dash , Thomas Shafee , Peta J Harvey , Chuchu Zhang , Steve Peigneur , Jennifer R Deuis , Irina Vetter , Jan Tytgat , Marilyn A Anderson , David J Craik , Thomas Durek , Eivind A B Undheim

Fasciclin-Like Arabinogalactan-Protein 16 (FLA16) Is Required for Stem Development in

Frontiers in plant science

Avec: Edgar Liu , Colleen P MacMillan , Thomas Shafee , Yingxuan Ma , Julian Ratcliffe , Allison van de Meene , Antony Bacic , John Humphries , Kim L Johnson

Réseau de co-auteurs

Antony Bacic 6 collaborations

Raymond S Norton 3 collaborations

Kim L Johnson 3 collaborations

Marilyn A Anderson 3 collaborations

Michela L Mitchell 2 collaborations

Eivind A B Undheim 2 collaborations

Allison van de Meene 2 collaborations

Monika S Doblin 2 collaborations

Yingxuan Ma 2 collaborations

Julian Ratcliffe 2 collaborations

Colleen P MacMillan 2 collaborations

Houcemeddine Turki 2 collaborations

Mohamed Ben Aouicha 2 collaborations

Diptanshu Das 2 collaborations

Daniel Mietchen 2 collaborations

Jack S Nunn 1 collaboration

Steven Chang 1 collaboration

Richard Stephens 1 collaboration

Jim Elliott 1 collaboration

Sandy Oliver 1 collaboration

Denny John 1 collaboration

Maureen Smith 1 collaboration

Neil Orr 1 collaboration

Jennifer Preston 1 collaboration

Josephine Borthwick 1 collaboration

Thijs van Vlijmen 1 collaboration

James Ansell 1 collaboration

Francois Houyez 1 collaboration

Maria Sharmila Alina de Sousa 1 collaboration

Roan D Plotz 1 collaboration

Jessica L Oliver 1 collaboration

Yaela Golumbic 1 collaboration

Rona Macniven 1 collaboration

Samuel Wines 1 collaboration

Ann Borda 1 collaboration

Håkon da Silva Hyldmo 1 collaboration

Pen-Yuan Hsing 1 collaboration

Lena Denis 1 collaboration

Carolyn Thompson 1 collaboration

Lauren M Ashwood 1 collaboration

Khaled A Elnahriry 1 collaboration

Zachary K Stewart 1 collaboration

Muhammad Umair Naseem 1 collaboration

Tibor G Szanto 1 collaboration

Chloé A van der Burg 1 collaboration

Hayden L Smith 1 collaboration

Joachim M Surm 1 collaboration

Bruno Madio 1 collaboration

Brett R Hamilton 1 collaboration

Shaodong Guo 1 collaboration

Dorothy C C Wai 1 collaboration

Victoria L Coyne 1 collaboration

Matthew J Phillips 1 collaboration

Kevin J Dudley 1 collaboration

David A Hurwood 1 collaboration

Gyorgy Panyi 1 collaboration

Glenn F King 1 collaboration

Ana Pavasovic 1 collaboration

Peter J Prentis 1 collaboration

Edwin R Lampugnani 1 collaboration

Kris Ford 1 collaboration

Yin Ying Ho 1 collaboration

Jelle Lahnstein 1 collaboration

Hwei-Ting Tan 1 collaboration

Rachel A Burton 1 collaboration

Geoffrey B Fincher 1 collaboration

Jochen Zimmer 1 collaboration

Xiaohui Xing 1 collaboration

Vincent Bulone 1 collaboration

Eric M Roberts 1 collaboration

Asha M Mudiyanselage 1 collaboration

Shawn D Mansfield 1 collaboration

Lukas Pfeifer 1 collaboration

Birgit Classen 1 collaboration

Mohamed Ali Hadj Taieb 1 collaboration

Denny Vrandečić 1 collaboration

Helmi Hamdi 1 collaboration

Daniel P Oehme 1 collaboration

Matthew T Downton 1 collaboration

Dariusz Jemielniak 1 collaboration

Mohamed A Hadj Taieb 1 collaboration

Jose E Labra Gayo 1 collaboration

Mus'ab Banat 1 collaboration

Eric Prud'hommeaux 1 collaboration

Tiago Lubiana 1 collaboration

Anthony T Papenfuss 1 collaboration

Andra Waagmeester 1 collaboration

Gregory Stupp 1 collaboration

Sebastian Burgstaller-Muehlbacher 1 collaboration

Benjamin M Good 1 collaboration

Malachi Griffith 1 collaboration

Obi L Griffith 1 collaboration

Kristina Hanspers 1 collaboration

Henning Hermjakob 1 collaboration

Toby S Hudson 1 collaboration

Kevin Hybiske 1 collaboration

Sarah M Keating 1 collaboration

Magnus Manske 1 collaboration

Michael Mayers 1 collaboration

Elvira Mitraka 1 collaboration

Alexander R Pico 1 collaboration

Timothy Putman 1 collaboration

Anders Riutta 1 collaboration

Nuria Queralt-Rosinach 1 collaboration

Lynn M Schriml 1 collaboration

Denise Slenter 1 collaboration

Ralf Stephan 1 collaboration

Katherine Thornton 1 collaboration

Ginger Tsueng 1 collaboration

Roger Tu 1 collaboration

Sabah Ul-Hasan 1 collaboration

Egon Willighagen 1 collaboration

Chunlei Wu 1 collaboration

Andrew I Su 1 collaboration

Kathy Parisi 1 collaboration

James A McKenna 1 collaboration

Rohan Lowe 1 collaboration

Karen S Harris 1 collaboration

Rosemary Guarino 1 collaboration

Eunice Lee 1 collaboration

Nicole L van der Weerden 1 collaboration

Mark R Bleackley 1 collaboration

Kim Johnson 1 collaboration

Thomas S Dash 1 collaboration

Peta J Harvey 1 collaboration

Chuchu Zhang 1 collaboration

Steve Peigneur 1 collaboration

Jennifer R Deuis 1 collaboration

Irina Vetter 1 collaboration

Jan Tytgat 1 collaboration

David J Craik 1 collaboration

Thomas Durek 1 collaboration

Edgar Liu 1 collaboration

John Humphries 1 collaboration