Genome-wide association analyses of quantitative disease resistance in diverse sets of soybean [Glycine max (L.) Merr.] plant introductions.
Chromosome Mapping
Chromosomes, Plant
/ genetics
Crops, Agricultural
/ genetics
Datasets as Topic
Disease Resistance
/ genetics
Genome, Plant
/ genetics
Genome-Wide Association Study
Introduced Species
Phytophthora
/ pathogenicity
Plant Breeding
Polymorphism, Single Nucleotide
Quantitative Trait Loci
Republic of Korea
Seeds
/ genetics
Glycine max
/ genetics
United States
Journal
PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081
Informations de publication
Date de publication:
2020
2020
Historique:
received:
29
08
2019
accepted:
25
12
2019
entrez:
21
3
2020
pubmed:
21
3
2020
medline:
28
5
2020
Statut:
epublish
Résumé
Phytophthora sojae is one of the costliest soybean pathogens in the US. Quantitative disease resistance (QDR) is a vital part of Phytophthora disease management. In this study, QDR was measured in 478 and 495 plant introductions (PIs) towards P. sojae isolates OH.121 and C2.S1, respectively, in genome-wide association (GWA) analyses to identify genetic markers linked to QDR loci (QDRL). Populations were generated by sampling PIs from the US, the Republic of Korea, and the full collection of PIs maintained by the USDA. Additionally, a meta-analysis of QDRL reported from bi-parental studies was done to compare past and present findings. Twenty-four significant marker-trait associations were identified from the 478 PIs phenotyped with OH.121, and an additional 24 marker-trait associations were identified from the 495 PIs phenotyped with C2.S1. In total, 48 significant markers were distributed across 16 chromosomes and based on linkage analysis, represent a total of 44 QDRL. The majority of QDRL were identified with only one of the two isolates, and only a region on chromosome 13 was consistently identified. Regions on chromosomes 3, 13, and 17 were identified in previous GWA-analyses and were re-identified in this study. Five QDRL co-localized with P. sojae meta-QDRL identified from QDRL reported in previous biparental mapping studies. The remaining regions represent novel QDRL, in the soybean-P. sojae pathosystem and were primarily identified in germplasm from the Republic of Korea. Overall, the number of loci identified in this study highlights the complexity of QDR to P. sojae.
Identifiants
pubmed: 32196522
doi: 10.1371/journal.pone.0227710
pii: PONE-D-19-24411
pmc: PMC7083333
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0227710Déclaration de conflit d'intérêts
The authors have declared that no competing interests exist.
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