Slower development of lower canopy beans produces better coffee.
Canopy
coffee
development stages
gene expression
metabolism pathways
sucrose
transcriptome
Journal
Journal of experimental botany
ISSN: 1460-2431
Titre abrégé: J Exp Bot
Pays: England
ID NLM: 9882906
Informations de publication
Date de publication:
06 07 2020
06 07 2020
Historique:
received:
18
12
2019
accepted:
19
03
2020
pubmed:
25
3
2020
medline:
15
5
2021
entrez:
25
3
2020
Statut:
ppublish
Résumé
The production of high-quality coffee is being challenged by changing climates in coffee-growing regions. The coffee beans from the upper and lower canopy at different development stages of the same plants were analyzed to investigate the impact of the microenvironment on gene expression and coffee quality. Compared with coffee beans from the upper canopy, lower canopy beans displayed more intense aroma with higher caffeine, trigonelline, and sucrose contents, associated with greater gene expression in the representative metabolic pathways. Global gene expression indicated a longer ripening in the lower canopy, resulting from higher expression of genes relating to growth inhibition and suppression of chlorophyll degradation during early bean ripening. Selection of genotypes or environments that enhance expression of the genes slowing bean development may produce higher quality coffee beans, allowing coffee production in a broader range of available future environments.
Identifiants
pubmed: 32206798
pii: 5811182
doi: 10.1093/jxb/eraa151
pmc: PMC7337091
doi:
Substances chimiques
Coffee
0
Sucrose
57-50-1
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
4201-4214Informations de copyright
© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Experimental Biology.
Références
Plant J. 2018 Mar;93(6):1143-1159
pubmed: 29381239
Plant J. 2010 Feb 1;61(3):409-22
pubmed: 19919572
Planta. 2009 Jun;230(1):149-63
pubmed: 19363683
Plant Cell. 2007 Jun;19(6):1912-29
pubmed: 17573536
Plant Biotechnol J. 2018 Jan;16(1):72-85
pubmed: 28499069
BMC Genomics. 2014 Jul 21;15:612
pubmed: 25047956
Gene. 2016 Jan 15;576(1 Pt 1):150-9
pubmed: 26449398
Biochim Biophys Acta. 1996 Nov 12;1277(1-2):35-60
pubmed: 8950371
BMC Genomics. 2015 Mar 07;16:157
pubmed: 25881128
Plant Cell. 2009 Jul;21(7):2072-89
pubmed: 19574437
Development. 2013 Mar;140(5):943-50
pubmed: 23404103
Curr Opin Plant Biol. 2018 Oct;45(Pt B):231-236
pubmed: 29779965
Food Res Int. 2018 Mar;105:278-285
pubmed: 29433216
Mol Plant. 2019 Jun 3;12(6):879-892
pubmed: 30639314
Biochim Biophys Acta. 2000 Jun 21;1492(1):1-14
pubmed: 10858526
Gene. 2012 Mar 10;495(2):146-53
pubmed: 22245611
Front Plant Sci. 2018 Feb 14;9:108
pubmed: 29491871
New Phytol. 2009;182(1):146-62
pubmed: 19207685
Food Res Int. 2018 Jan;103:406-414
pubmed: 29389631
Nat Plants. 2017 Jun 19;3:17081
pubmed: 28628132
Plant Biotechnol J. 2019 Jan;17(1):264-274
pubmed: 29878497
Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12428-32
pubmed: 7809054
Plant J. 2002 May;30(3):289-99
pubmed: 12000677
Front Plant Sci. 2018 Mar 06;9:287
pubmed: 29559990
Planta. 2015 Jan;241(1):179-91
pubmed: 25249475
Plant Cell. 2015 Jan;27(1):214-27
pubmed: 25616872
Curr Opin Plant Biol. 2019 Dec 10;:
pubmed: 31836470
Mol Plant. 2013 May;6(3):686-703
pubmed: 23142764
Plant Cell. 2004 May;16(5):1276-87
pubmed: 15100396
Mol Cell Proteomics. 2008 Jul;7(7):1297-316
pubmed: 18385124
Glob Chang Biol. 2016 Jan;22(1):415-31
pubmed: 26363182
Bioinformatics. 2014 Feb 01;30(3):301-4
pubmed: 24319002
Plant Physiol. 2000 Nov;124(3):1121-30
pubmed: 11080289
PLoS One. 2014 Oct 15;9(10):e110065
pubmed: 25333723
Sci Adv. 2019 Jan 16;5(1):eaav3473
pubmed: 30746478
Plant Cell. 2008 Apr;20(4):1012-28
pubmed: 18381925
Proteomics. 2006 Aug;6(15):4309-20
pubmed: 16800035
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Planta. 2012 Aug;236(2):677-90
pubmed: 22526496
Plant Mol Biol. 1994 Aug;25(5):791-8
pubmed: 8075396
FEBS Lett. 2003 Jan 16;534(1-3):75-81
pubmed: 12527364
Plant J. 1995 Jan;7(1):61-75
pubmed: 7894512
Plant Cell Physiol. 2005 May;46(5):743-53
pubmed: 15753104
Plant Cell. 2011 Nov;23(11):3944-60
pubmed: 22108404
Mol Gen Genet. 1993 Apr;238(1-2):17-25
pubmed: 8479424
Science. 2014 Sep 5;345(6201):1181-4
pubmed: 25190796
Mol Cell Biol. 1987 Dec;7(12):4273-9
pubmed: 2449603
Ultrason Sonochem. 2014 Jan;21(1):93-7
pubmed: 23835397
Plant Mol Biol. 2005 Dec;59(6):927-44
pubmed: 16307367
Sci Rep. 2018 Jul 30;8(1):11414
pubmed: 30061608
Biochemistry. 2001 Oct 16;40(41):12276-84
pubmed: 11591146
Front Plant Sci. 2016 Jun 29;7:947
pubmed: 27446174
J Exp Bot. 2006;57(12):3243-58
pubmed: 16926239
J Plant Physiol. 2003 Nov;160(11):1375-84
pubmed: 14658391
Proc Natl Acad Sci U S A. 1995 Sep 12;92(19):8930-4
pubmed: 7568046
Plant Cell Environ. 2010 Jul;33(7):1220-33
pubmed: 20199615
New Phytol. 2008;178(4):781-97
pubmed: 18384509
Food Chem. 2014 Feb 15;145:784-8
pubmed: 24128545
Cell. 2008 Apr 4;133(1):164-76
pubmed: 18394996
Annu Rev Plant Biol. 2014;65:33-67
pubmed: 24579990
Gigascience. 2017 Nov 1;6(11):1-13
pubmed: 29048540
J Agric Food Chem. 2000 Aug;48(8):3420-4
pubmed: 10956127
BMC Genomics. 2017 May 22;18(1):395
pubmed: 28532419
J Exp Bot. 2016 Jan;67(1):341-52
pubmed: 26503540
Plant Cell. 2003 Nov;15(11):2532-50
pubmed: 14555694
Methods Mol Biol. 2014;1099:23-8
pubmed: 24243193
Science. 2018 Aug 17;361(6403):
pubmed: 30115782