Community standards for open cell migration data.
CMSO
FAIR data
MIACME
biotracks
cell migration
data standards
frictionless data package
metadata
Journal
GigaScience
ISSN: 2047-217X
Titre abrégé: Gigascience
Pays: United States
ID NLM: 101596872
Informations de publication
Date de publication:
01 05 2020
01 05 2020
Historique:
received:
26
10
2019
revised:
02
04
2020
accepted:
02
04
2020
entrez:
13
5
2020
pubmed:
13
5
2020
medline:
5
10
2021
Statut:
ppublish
Résumé
Cell migration research has become a high-content field. However, the quantitative information encapsulated in these complex and high-dimensional datasets is not fully exploited owing to the diversity of experimental protocols and non-standardized output formats. In addition, typically the datasets are not open for reuse. Making the data open and Findable, Accessible, Interoperable, and Reusable (FAIR) will enable meta-analysis, data integration, and data mining. Standardized data formats and controlled vocabularies are essential for building a suitable infrastructure for that purpose but are not available in the cell migration domain. We here present standardization efforts by the Cell Migration Standardisation Organisation (CMSO), an open community-driven organization to facilitate the development of standards for cell migration data. This work will foster the development of improved algorithms and tools and enable secondary analysis of public datasets, ultimately unlocking new knowledge of the complex biological process of cell migration.
Identifiants
pubmed: 32396199
pii: 5836133
doi: 10.1093/gigascience/giaa041
pmc: PMC7317087
pii:
doi:
Substances chimiques
Biomarkers
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : European Research Council
ID : 617430
Pays : International
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/E025080/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/I000771/1
Pays : United Kingdom
Informations de copyright
© The Author(s) 2020. Published by Oxford University Press.
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