Molecular and evolutionary analysis of dengue virus serotype 2 isolates from Korean travelers in 2015.
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
Aug 2020
Aug 2020
Historique:
received:
08
11
2019
accepted:
10
04
2020
pubmed:
16
5
2020
medline:
21
7
2020
entrez:
16
5
2020
Statut:
ppublish
Résumé
In Korea, dengue infection has been frequently reported in travelers to tropical and subtropical countries. Global warming increases the probability of autochthonous dengue outbreaks in Korea. In this report, the molecular and evolutionary properties of four dengue virus (DENV) type 2 isolates from Korean overseas travelers were examined. Three of these isolates were classified as Cosmopolitan genotypes and further divided into sublineages 1 (43,253, 43,254) and 2 (43,248), while the other isolate (KBPV-VR29) was related to American genotypes. The variable amino acid motifs related to virulence and replication were identified in the structural and non-structural proteins. A negative selection mechanism was clearly verified in all of the DENV proteins. Potential recombination events were identified in the NS5 protein of the XSBN10 strain. The substitution rate (5.32 × 10
Identifiants
pubmed: 32409874
doi: 10.1007/s00705-020-04653-z
pii: 10.1007/s00705-020-04653-z
pmc: PMC7351809
doi:
Substances chimiques
RNA, Viral
0
Viral Proteins
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1739-1748Subventions
Organisme : Korea Research Institute of Bioscience and Biotechnology
ID : KGM4571922
Références
Infect Genet Evol. 2009 Jul;9(4):523-40
pubmed: 19460319
PeerJ. 2016 Aug 24;4:e2326
pubmed: 27635316
Lancet. 2007 Nov 10;370(9599):1644-52
pubmed: 17993365
J Mol Recognit. 2008 Jul-Aug;21(4):243-55
pubmed: 18496882
PLoS One. 2016 May 23;11(5):e0154760
pubmed: 27213782
J Virol Methods. 2010 Oct;169(1):202-6
pubmed: 20600330
Mol Biol Evol. 2012 Aug;29(8):1969-73
pubmed: 22367748
Emerg Infect Dis. 2012 Sep;18(9):1525-7
pubmed: 22931747
Sci Transl Med. 2011 Dec 21;3(114):114ra128
pubmed: 22190239
Mol Biol Evol. 2005 May;22(5):1185-92
pubmed: 15703244
Virology. 1990 Feb;174(2):479-93
pubmed: 2129562
J Virol. 1999 Jun;73(6):4738-47
pubmed: 10233934
PLoS One. 2018 Jun 28;13(6):e0199205
pubmed: 29953493
J Gen Virol. 2012 Jan;93(Pt 1):72-82
pubmed: 21957126
Nat Protoc. 2009;4(3):363-71
pubmed: 19247286
Hum Vaccin Immunother. 2018 Mar 4;14(3):518-522
pubmed: 28857677
Euro Surveill. 2016 May 26;21(21):
pubmed: 27254729
Nat Commun. 2018 Jun 15;9(1):2355
pubmed: 29907741
Adv Virus Res. 2003;59:23-61
pubmed: 14696326
Nature. 2013 Apr 25;496(7446):504-7
pubmed: 23563266
Am J Trop Med Hyg. 2014 Sep;91(3):611-20
pubmed: 25002298
PLoS Negl Trop Dis. 2016 Mar 15;10(3):e0004511
pubmed: 26977703
Virus Evol. 2015 May 26;1(1):vev003
pubmed: 27774277
PLoS One. 2018 Nov 12;13(11):e0207220
pubmed: 30419004
Mol Biol Evol. 2005 May;22(5):1208-22
pubmed: 15703242
Virology. 1997 Apr 14;230(2):244-51
pubmed: 9143280
Genome Announc. 2015 Nov 25;3(6):
pubmed: 26607896
PLoS Comput Biol. 2014 Apr 10;10(4):e1003537
pubmed: 24722319
Mol Biol Evol. 2013 May;30(5):1196-205
pubmed: 23420840
Mol Biol Evol. 2018 Mar 1;35(3):773-777
pubmed: 29301006
Emerg Infect Dis. 2015 Mar;21(3):517-20
pubmed: 25695200
Science. 2017 Nov 17;358(6365):929-932
pubmed: 29097492
Int J Infect Dis. 2019 Jul;84S:S25-S33
pubmed: 30528666
PLoS One. 2012;7(9):e44984
pubmed: 23028722
Proc Natl Acad Sci U S A. 1994 Mar 29;91(7):2395-400
pubmed: 8146129
Front Cell Infect Microbiol. 2017 Jul 12;7:317
pubmed: 28748176
PLoS Genet. 2012;8(7):e1002764
pubmed: 22807683
Jpn J Infect Dis. 2016;69(1):1-5
pubmed: 25766613
J Virol. 2010 Oct;84(19):9733-48
pubmed: 20660197
Mol Biol Evol. 2016 Jul;33(7):1870-4
pubmed: 27004904
Front Cell Infect Microbiol. 2018 Jun 27;8:219
pubmed: 29998087
Curr Opin Infect Dis. 2006 Oct;19(5):429-36
pubmed: 16940865
J Virol Methods. 2016 Sep;235:158-167
pubmed: 27334982
Sci Rep. 2016 Sep 29;6:34444
pubmed: 27681163
Nature. 1995 May 25;375(6529):291-8
pubmed: 7753193
Genomics Proteomics Bioinformatics. 2009 Jun;7(1-2):47-56
pubmed: 19591791