Estimating a novel stochastic model for within-field disease dynamics of banana bunchy top virus via approximate Bayesian computation.


Journal

PLoS computational biology
ISSN: 1553-7358
Titre abrégé: PLoS Comput Biol
Pays: United States
ID NLM: 101238922

Informations de publication

Date de publication:
05 2020
Historique:
received: 04 09 2019
accepted: 15 04 2020
revised: 29 05 2020
pubmed: 19 5 2020
medline: 29 8 2020
entrez: 19 5 2020
Statut: epublish

Résumé

The Banana Bunchy Top Virus (BBTV) is one of the most economically important vector-borne banana diseases throughout the Asia-Pacific Basin and presents a significant challenge to the agricultural sector. Current models of BBTV are largely deterministic, limited by an incomplete understanding of interactions in complex natural systems, and the appropriate identification of parameters. A stochastic network-based Susceptible-Infected-Susceptible model has been created which simulates the spread of BBTV across the subsections of a banana plantation, parameterising nodal recovery, neighbouring and distant infectivity across summer and winter. Findings from posterior results achieved through Markov Chain Monte Carlo approach to approximate Bayesian computation suggest seasonality in all parameters, which are influenced by correlated changes in inspection accuracy, temperatures and aphid activity. This paper demonstrates how the model may be used for monitoring and forecasting of various disease management strategies to support policy-level decision making.

Identifiants

pubmed: 32421712
doi: 10.1371/journal.pcbi.1007878
pii: PCOMPBIOL-D-19-01505
pmc: PMC7259802
doi:

Substances chimiques

DNA, Viral 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1007878

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Références

Adv Virus Res. 1987;33:301-25
pubmed: 3296696
Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10576-81
pubmed: 19525398
Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15324-8
pubmed: 14663152
Nature. 2014 Jul 10;511(7508):228-31
pubmed: 25008532
Proc Math Phys Eng Sci. 2018 Jul;474(2215):20180129
pubmed: 30100809
Interdiscip Perspect Infect Dis. 2011;2011:284909
pubmed: 21437001
Genetics. 2002 Dec;162(4):2025-35
pubmed: 12524368
PLoS One. 2012;7(8):e42391
pubmed: 22879960
Phytopathology. 2008 Jun;98(6):743-8
pubmed: 18944300

Auteurs

Abhishek Varghese (A)

School of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia.
ARC Centre for Excellence in Mathematical and Statistical Frontiers (ACEMS), Brisbane, Australia.

Christopher Drovandi (C)

School of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia.
ARC Centre for Excellence in Mathematical and Statistical Frontiers (ACEMS), Brisbane, Australia.

Antonietta Mira (A)

Institute of Computational Science, Università della Svizzera italiana, Lugano, Switzerland.
Department of Science and High Technology, Università degli Studi dell'Insubria, Como, Italy.

Kerrie Mengersen (K)

School of Mathematical Sciences, Queensland University of Technology, Brisbane, Australia.
ARC Centre for Excellence in Mathematical and Statistical Frontiers (ACEMS), Brisbane, Australia.

Articles similaires

Genome, Viral Ralstonia Composting Solanum lycopersicum Bacteriophages

High-throughput Bronchus-on-a-Chip system for modeling the human bronchus.

Akina Mori, Marjolein Vermeer, Lenie J van den Broek et al.
1.00
Humans Bronchi Lab-On-A-Chip Devices Epithelial Cells Goblet Cells
Humans Immunization, Secondary COVID-19 Vaccines COVID-19 SARS-CoV-2

Classifications MeSH