Uncovering Sub-Structure and Genomic Profiles in Across-Countries Subpopulations of Angus Cattle.
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
29 05 2020
29 05 2020
Historique:
received:
04
12
2019
accepted:
04
05
2020
entrez:
31
5
2020
pubmed:
31
5
2020
medline:
15
12
2020
Statut:
epublish
Résumé
Highlighting genomic profiles for geographically distinct subpopulations of the same breed may provide insights into adaptation mechanisms to different environments, reveal genomic regions divergently selected, and offer initial guidance to joint genomic analysis. Here, we characterized similarities and differences between the genomic patterns of Angus subpopulations, born and raised in Canada (N = 382) and Brazil (N = 566). Furthermore, we systematically scanned for selection signatures based on the detection of autozygosity islands common between the two subpopulations, and signals of divergent selection, via F
Identifiants
pubmed: 32471998
doi: 10.1038/s41598-020-65565-1
pii: 10.1038/s41598-020-65565-1
pmc: PMC7260210
doi:
Substances chimiques
Genetic Markers
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
8770Commentaires et corrections
Type : ErratumIn
Références
Nat Rev Immunol. 2005 Feb;5(2):125-35
pubmed: 15688040
Sci Rep. 2017 Dec 7;7(1):17140
pubmed: 29215042
BMC Genomics. 2014 Jun 17;15:478
pubmed: 24935670
Animal. 2017 Jan;11(1):15-23
pubmed: 27330040
Anim Genet. 2013 Dec;44(6):636-47
pubmed: 23909810
BMC Genet. 2016 Feb 01;17:32
pubmed: 26832943
Anim Genet. 2012 Dec;43(6):785-9
pubmed: 22497494
PLoS One. 2018 Aug 8;13(8):e0201876
pubmed: 30089161
J Hered. 2017 Jul 1;108(5):561-573
pubmed: 28486592
PLoS One. 2012;7(9):e44751
pubmed: 23028602
Nat Genet. 2018 Mar;50(3):362-367
pubmed: 29459679
Genome Res. 2002 Dec;12(12):1805-14
pubmed: 12466284
Anim Genet. 2018 Dec;49(6):550-563
pubmed: 30246258
Nucleic Acids Res. 2019 Jan 8;47(D1):D745-D751
pubmed: 30407521
Nat Genet. 2008 Feb;40(2):198-203
pubmed: 18193045
Endocr Rev. 2003 Dec;24(6):782-801
pubmed: 14671005
BMC Genomics. 2018 Jan 27;19(1):98
pubmed: 29374456
BMC Genet. 2014 Jan 15;15:8
pubmed: 24428918
BMC Genomics. 2013 Dec 13;14:876
pubmed: 24330634
Nat Protoc. 2009;4(1):44-57
pubmed: 19131956
J Dairy Sci. 2012 Oct;95(10):6103-12
pubmed: 22863091
Front Genet. 2019 Oct 04;10:926
pubmed: 31636655
Am J Hum Genet. 2008 Sep;83(3):359-72
pubmed: 18760389
BMC Genet. 2012 Aug 14;13:70
pubmed: 22888858
Nucleic Acids Res. 2019 Jan 8;47(D1):D701-D710
pubmed: 30407520
Gigascience. 2015 Feb 25;4:7
pubmed: 25722852
Immunol Res. 2012 Dec;54(1-3):169-76
pubmed: 22528124
BMC Genomics. 2013 May 05;14:305
pubmed: 23642139
Genet Sel Evol. 2015 Nov 26;47:92
pubmed: 26612660
BMC Genomics. 2012 Jan 17;13:24
pubmed: 22252454
Genet Sel Evol. 2017 Nov 7;49(1):83
pubmed: 29115934
Nat Genet. 2012 Jan 22;44(3):260-8
pubmed: 22267201
BMC Genomics. 2013 Jun 07;14:382
pubmed: 23758707
Genet Sel Evol. 2015 Jun 19;47:49
pubmed: 26089079
J Dairy Sci. 2009 Feb;92(2):433-43
pubmed: 19164653
Genet Sel Evol. 2015 Nov 02;47:84
pubmed: 26525050
J Dairy Sci. 2018 Jan;101(1):705-716
pubmed: 29128212
J Anim Sci. 2011 Aug;89(8):2297-309
pubmed: 21421834
Front Genet. 2015 Dec 01;6:337
pubmed: 26648975
Bioinformatics. 2010 May 1;26(9):1269-70
pubmed: 20308177
Genetics. 2008 Jul;179(3):1503-12
pubmed: 18622038
Genet Sel Evol. 2018 May 2;50(1):22
pubmed: 29720080
Theor Appl Genet. 1968 Jun;38(6):226-31
pubmed: 24442307
Int J Biometeorol. 2014 Sep;58(7):1665-72
pubmed: 24362770
J Anim Sci. 2015 Nov;93(11):5119-27
pubmed: 26641032
Methods Mol Biol. 2009;563:123-40
pubmed: 19597783
Evolution. 1993 Jun;47(3):855-863
pubmed: 28567899
J Dairy Sci. 1994 Sep;77(9):2671-8
pubmed: 7814738
Genet Sel Evol. 2019 Jun 20;51(1):29
pubmed: 31221081
Sci Rep. 2018 Aug 28;8(1):12984
pubmed: 30154520
Genetics. 2009 Dec;183(4):1545-53
pubmed: 19822733
Annu Rev Genet. 2013;47:97-120
pubmed: 24274750
J Dairy Sci. 2013 Jul;96(7):4697-706
pubmed: 23684028
Genetics. 2016 May;203(1):433-50
pubmed: 27017625
J Anim Sci. 2016 Oct;94(10):4087-4095
pubmed: 27898882
J Dairy Sci. 2018 Apr;101(4):3686-3701
pubmed: 29103719
J Anim Sci. 2012 Jul;90(7):2130-41
pubmed: 22247112
Parasit Vectors. 2017 Jan 31;10(1):51
pubmed: 28143523
Genomics. 2010 Mar;95(3):176-82
pubmed: 20060464
J Dairy Sci. 2012 Feb;95(2):899-908
pubmed: 22281354
Immunity. 2018 Jun 19;48(6):1172-1182.e6
pubmed: 29858012
Genome Res. 2009 Oct;19(10):1849-60
pubmed: 19541915
BMC Genomics. 2015 Mar 15;16:187
pubmed: 25879195
J Dairy Sci. 2011 Nov;94(11):5673-82
pubmed: 22032391
BMC Genet. 2014 Mar 17;15:34
pubmed: 24636660
BMC Genomics. 2011 Sep 23;12:460
pubmed: 21943305
J Appl Physiol (1985). 2002 Apr;92(4):1725-42
pubmed: 11896043
Vet Res. 2015 Nov 19;46:131
pubmed: 26582546
Biol Open. 2017 Oct 15;6(10):1483-1492
pubmed: 28838967
Nat Genet. 2015 Nov;47(11):1294-1303
pubmed: 26414677
J Dairy Sci. 2008 Nov;91(11):4414-23
pubmed: 18946147
BMC Genet. 2007 Oct 25;8:74
pubmed: 17961247
Gigascience. 2020 Mar 1;9(3):
pubmed: 32191811
Front Genet. 2012 Aug 14;3:152
pubmed: 22912646
BMC Genomics. 2014 Sep 04;15:756
pubmed: 25185836
J Dairy Sci. 2017 Dec;100(12):9674-9680
pubmed: 28964518
J Anim Breed Genet. 2014 Aug;131(4):305-12
pubmed: 24438200
J Anim Sci. 2013 Oct;91(10):4669-78
pubmed: 24078618