[Etiology of epidemic outbreaks COVID-19 on Wuhan, Hubei province, Chinese People Republic associated with 2019-nCoV (Nidovirales, Coronaviridae, Coronavirinae, Betacoronavirus, Subgenus Sarbecovirus): lessons of SARS-CoV outbreak.]
Animals
Betacoronavirus
/ classification
COVID-19
China
/ epidemiology
Chiroptera
/ virology
Coronavirus Infections
/ diagnosis
Disease Reservoirs
/ virology
Epidemiological Monitoring
Hedgehogs
/ virology
Humans
Mustelidae
/ virology
Pandemics
Phylogeny
Pneumonia, Viral
/ diagnosis
Public Health
/ statistics & numerical data
Respiratory Tract Infections
/ diagnosis
Russia
/ epidemiology
SARS-CoV-2
Snakes
/ virology
Viverridae
/ virology
2019-nCoV
Betacoronavirus
COVID-19, bats
Coronaviridae
MERS-CoV
SARS-CoV
ecology
phylogenetic
review
sequencing
Journal
Voprosy virusologii
ISSN: 2411-2097
Titre abrégé: Vopr Virusol
Pays: Russia (Federation)
ID NLM: 0417337
Informations de publication
Date de publication:
2020
2020
Historique:
received:
20
01
2020
accepted:
29
01
2020
entrez:
5
6
2020
pubmed:
5
6
2020
medline:
18
6
2020
Statut:
ppublish
Résumé
Results of analysis of phylogenetic, virological, epidemiological, ecological, clinical data of COVID-19 outbreaks in Wuhan, China (PRC) in comparison with SARS-2002 and MERS-2012 outbreaks allow to conclude: - the etiological agent of COVID-19 is coronavirus (2019-CoV), phylogenetically close to the SARS-CoV, isolated from human, and SARS-related viruses isolated from bats (SARS-related bat CoV viruses). These viruses belong to the Sarbecovirus subgenus, Betacoronavirus genus, Orthocoronavirinae subfamily, Coronaviridae family (Cornidovirinea: Nidovirales). COVID-19 is a variant of SARS-2002 and is different from MERS-2012 outbreak, which were caused by coronavirus belonged to the subgenus Merbecovirus of the same genus; - according to the results of phylogenetic analysis of 35 different betacoronaviruses, isolated from human and from wild animals in 2002-2019, the natural source of COVID-19 and SARS-CoV (2002) is bats of Rhinolophus genus (Rhinolophidae) and, probably, some species of other genera. An additional reservoir of the virus could be an intermediate animal species (snakes, civet, hedgehogs, badgers, etc.) that are infected by eating of infected bats. SARS-like coronaviruses circulated in bats in the interepidemic period (2003-2019); - seasonal coronaviruses (subgenus Duvinacovirus, Alphacoronavirus) are currently circulating (November 2019 - January 2020) in the European part of Russia, Urals, Siberia and the Far East of Russia, along with the influenza viruses A(H1N1)pdm09, A(H3N2), and В, as well as six other respiratory viruses (HPIV, HAdV, HRSV, HRV, HBoV, and HMPV).
Identifiants
pubmed: 32496715
doi: 10.36233/0507-4088-2020-65-1-6-15
doi:
Types de publication
Journal Article
Review
Langues
rus
Sous-ensembles de citation
IM
Pagination
6-15Déclaration de conflit d'intérêts
The authors declare no conflict of interest.