TorchANI: A Free and Open Source PyTorch-Based Deep Learning Implementation of the ANI Neural Network Potentials.


Journal

Journal of chemical information and modeling
ISSN: 1549-960X
Titre abrégé: J Chem Inf Model
Pays: United States
ID NLM: 101230060

Informations de publication

Date de publication:
27 07 2020
Historique:
pubmed: 23 6 2020
medline: 22 6 2021
entrez: 23 6 2020
Statut: ppublish

Résumé

This paper presents TorchANI, a PyTorch-based program for training/inference of ANI (ANAKIN-ME) deep learning models to obtain potential energy surfaces and other physical properties of molecular systems. ANI is an accurate neural network potential originally implemented using C++/CUDA in a program called NeuroChem. Compared with NeuroChem, TorchANI has a design emphasis on being lightweight, user friendly, cross platform, and easy to read and modify for fast prototyping, while allowing acceptable sacrifice on running performance. Because the computation of atomic environmental vectors and atomic neural networks are all implemented using PyTorch operators, TorchANI is able to use PyTorch's autograd engine to automatically compute analytical forces and Hessian matrices, as well as do force training without requiring any additional codes. TorchANI is open-source and freely available on GitHub: https://github.com/aiqm/torchani.

Identifiants

pubmed: 32568524
doi: 10.1021/acs.jcim.0c00451
doi:

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

3408-3415

Auteurs

Xiang Gao (X)

Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States.

Farhad Ramezanghorbani (F)

Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States.

Olexandr Isayev (O)

Department of Chemistry, Carnegie Mellon University, Pittsburgh Pennsylvania 15213, United States.

Justin S Smith (JS)

Center for Nonlinear Studies and Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States.

Adrian E Roitberg (AE)

Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States.

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Classifications MeSH