Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling.

Betacoronavirus / genetics COVID-19 Coronavirus Infections / genetics Genome, Viral / genetics Humans Pandemics Pneumonia, Viral / genetics SARS-CoV-2 Systems Analysis Whole Genome Sequencing

Journal

Nature medicine
ISSN: 1546-170X
Titre abrégé: Nat Med
Pays: United States
ID NLM: 9502015

Informations de publication

Date de publication:
09 2020
Historique:
received: 21 04 2020
accepted: 25 06 2020
pubmed: 11 7 2020
medline: 25 9 2020
entrez: 11 7 2020
Statut: ppublish

Résumé

In January 2020, a novel betacoronavirus (family Coronaviridae), named severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was identified as the etiological agent of a cluster of pneumonia cases occurring in Wuhan City, Hubei Province, China

Identifiants

DOI: 10.1038/s41591-020-1000-7 PMID: 32647358
pubmed: 32647358
doi: 10.1038/s41591-020-1000-7
pii: 10.1038/s41591-020-1000-7
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1398-1404

Subventions

Organisme : Department of Health | National Health and Medical Research Council (NHMRC)
ID : 1123879
Pays : International
Organisme : Department of Health | National Health and Medical Research Council (NHMRC)
ID : 1043225
Pays : International

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Auteurs

Rebecca J Rockett (RJ)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
ORCID: 0000-0003-4329-5198

Alicia Arnott (A)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0003-2637-8936

Connie Lam (C)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
ORCID: 0000-0003-0998-5400

Rosemarie Sadsad (R)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Sydney Informatics Hub, Core Research Facilities, University of Sydney, Sydney, New South Wales, Australia.
ORCID: 0000-0003-2488-953X

Verlaine Timms (V)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
ORCID: 0000-0002-3883-4428

Karen-Ann Gray (KA)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
ORCID: 0000-0001-8887-6426

John-Sebastian Eden (JS)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Virus Research, Westmead Institute for Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0003-1374-3551

Sheryl Chang (S)

Centre for Complex Systems, Faculty of Engineering, University of Sydney, Sydney, New South Wales, Australia.
ORCID: 0000-0002-6119-828X

Mailie Gall (M)

Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0001-7018-2426

Jenny Draper (J)

Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0002-6916-6442

Eby M Sim (EM)

Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0002-3716-7344

Nathan L Bachmann (NL)

Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0003-2929-8544

Ian Carter (I)

Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0002-1911-3561

Kerri Basile (K)

Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0003-0647-4314

Roy Byun (R)

Health Protection NSW, NSW Ministry of Health, Sydney, New South Wales, Australia.
ORCID: 0000-0001-6411-2536

Matthew V O'Sullivan (MV)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0001-8783-5323

Sharon C-A Chen (SC)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.

Susan Maddocks (S)

Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.

Tania C Sorrell (TC)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, New South Wales, Australia.

Dominic E Dwyer (DE)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.

Edward C Holmes (EC)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
School of Life and Environmental Sciences and School of Medical Sciences, University of Sydney, Sydney, New South Wales, Australia.
ORCID: 0000-0001-9596-3552

Jen Kok (J)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.
Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
ORCID: 0000-0002-8796-283X

Mikhail Prokopenko (M)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Centre for Complex Systems, Faculty of Engineering, University of Sydney, Sydney, New South Wales, Australia.
ORCID: 0000-0002-4215-0344

Vitali Sintchenko (V)

Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia. vitali.sintchenko@sydney.edu.au.
Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia. vitali.sintchenko@sydney.edu.au.
Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia. vitali.sintchenko@sydney.edu.au.
Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, New South Wales, Australia. vitali.sintchenko@sydney.edu.au.
ORCID: 0000-0002-9261-3650

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Classifications MeSH

questionsmedicales.fr › Virus › Virus à ARN › Virus à ARN à brin positif › Nidovirales › Coronaviridae › Coronavirus › Betacoronavirus › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Maladies de l'appareil respiratoire › Infections de l'appareil respiratoire › Pneumopathie infectieuse › Pneumopathie virale › COVID-19 › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Infection › Maladies virales › Infections à virus à ARN › Infections à Nidovirales › Infections à Coronaviridae › Infections à coronavirus › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome viral › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Épidémies de maladies › Épidémies › Pandémies › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Maladies de l'appareil respiratoire › Infections de l'appareil respiratoire › Pneumopathie infectieuse › Pneumopathie virale › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Virus › Virus à ARN › Virus à ARN à brin positif › Nidovirales › Coronaviridae › Coronavirus › Betacoronavirus › Virus du SRAS › SARS-CoV-2 › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Sciences de l'information › Analyse des systèmes › Revealing COVID-19 transmission in Australia...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Séquençage du génome entier › Revealing COVID-19 transmission in Australia...