Nerve Segmentation with Deep Learning from Label-Free Endoscopic Images Obtained Using Coherent Anti-Stokes Raman Scattering.


Journal

Biomolecules
ISSN: 2218-273X
Titre abrégé: Biomolecules
Pays: Switzerland
ID NLM: 101596414

Informations de publication

Date de publication:
08 07 2020
Historique:
received: 25 05 2020
revised: 20 06 2020
accepted: 28 06 2020
entrez: 12 7 2020
pubmed: 12 7 2020
medline: 17 4 2021
Statut: epublish

Résumé

Semantic segmentation with deep learning to extract nerves from label-free endoscopic images obtained using coherent anti-Stokes Raman scattering (CARS) for nerve-sparing surgery is described. We developed a CARS rigid endoscope in order to identify the exact location of peripheral nerves in surgery. Myelinated nerves are visualized with a CARS lipid signal in a label-free manner. Because the lipid distribution includes other tissues as well as nerves, nerve segmentation is required to achieve nerve-sparing surgery. We propose using U-Net with a VGG16 encoder as a deep learning model and pre-training with fluorescence images, which visualize the lipid distribution similar to CARS images, before fine-tuning with a small dataset of CARS endoscopy images. For nerve segmentation, we used 24 CARS and 1,818 fluorescence nerve images of three rabbit prostates. We achieved label-free nerve segmentation with a mean accuracy of 0.962 and an F 1 value of 0.860. Pre-training on fluorescence images significantly improved the performance of nerve segmentation in terms of the mean accuracy and F 1 value ( p < 0 . 05 ). Nerve segmentation of label-free endoscopic images will allow for safer endoscopic surgery, while reducing dysfunction and improving prognosis after surgery.

Identifiants

pubmed: 32650539
pii: biom10071012
doi: 10.3390/biom10071012
pmc: PMC7407310
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Japan Society for the Promotion of Science
ID : 17H02793
Pays : International

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Auteurs

Naoki Yamato (N)

Graduate School/Faculty of Information Science and Technology, Hokkaido University, Sapporo 060-0814, Japan.

Mana Matsuya (M)

Graduate School/Faculty of Information Science and Technology, Hokkaido University, Sapporo 060-0814, Japan.

Hirohiko Niioka (H)

Institute for Datability Science, Osaka University, Suita 565-0871, Japan.

Jun Miyake (J)

Hitz Research Alliance Laboratory, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan.

Mamoru Hashimoto (M)

Faculty of Information Science and Technology, Hokkaido University, Sapporo 060-0814, Japan.

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Classifications MeSH