A framework to assess the quality and impact of bioinformatics training across ELIXIR.


Journal

PLoS computational biology
ISSN: 1553-7358
Titre abrégé: PLoS Comput Biol
Pays: United States
ID NLM: 101238922

Informations de publication

Date de publication:
07 2020
Historique:
entrez: 24 7 2020
pubmed: 24 7 2020
medline: 4 9 2020
Statut: epublish

Résumé

ELIXIR is a pan-European intergovernmental organisation for life science that aims to coordinate bioinformatics resources in a single infrastructure across Europe; bioinformatics training is central to its strategy, which aims to develop a training community that spans all ELIXIR member states. In an evidence-based approach for strengthening bioinformatics training programmes across Europe, the ELIXIR Training Platform, led by the ELIXIR EXCELERATE Quality and Impact Assessment Subtask in collaboration with the ELIXIR Training Coordinators Group, has implemented an assessment strategy to measure quality and impact of its entire training portfolio. Here, we present ELIXIR's framework for assessing training quality and impact, which includes the following: specifying assessment aims, determining what data to collect in order to address these aims, and our strategy for centralised data collection to allow for ELIXIR-wide analyses. In addition, we present an overview of the ELIXIR training data collected over the past 4 years. We highlight the importance of a coordinated and consistent data collection approach and the relevance of defining specific metrics and answer scales for consortium-wide analyses as well as for comparison of data across iterations of the same course.

Identifiants

pubmed: 32702016
doi: 10.1371/journal.pcbi.1007976
pii: PCOMPBIOL-D-19-01778
pmc: PMC7377377
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1007976

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

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Auteurs

Kim T Gurwitz (KT)

Department of Genetics, University of Cambridge, Cambridge, United Kingdom.

Prakash Singh Gaur (P)

EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.

Louisa J Bellis (LJ)

Department of Genetics, University of Cambridge, Cambridge, United Kingdom.

Lee Larcombe (L)

MRC Human Genetics Unit, The Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.

Eva Alloza (E)

Barcelona Supercomputing Center (BSC), INB Coordination node, Life Sciences Department, Barcelona, Spain.

Balint Laszlo Balint (BL)

University of Debrecen, Medical Faculty, Department of Biochemistry and Molecular Biology, Debrecen, Hungary.

Alexander Botzki (A)

VIB Flanders Institute for Biotechnology, VIB Bioinformatics Core, Ghent, Belgium.

Jure Dimec (J)

Faculty of Medicine, Institute for Biostatistics and Medical Informatics (IBMI), University of Ljubljana, Ljubljana, Slovenia.

Victoria Dominguez Del Angel (V)

IFB-URGI, Université Paris-Saclay, Centre de Recherche INRA, Versailles, France.

Pedro L Fernandes (PL)

Instituto Gulbenkian de Ciência, Oeiras, Portugal.

Eija Korpelainen (E)

CSC - IT Center for Science Ltd, Espoo, Finland.

Roland Krause (R)

Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.

Mateusz Kuzak (M)

DTL Dutch Techcentre for Life Sciences, Utrecht, the Netherlands.

Loredana Le Pera (L)

Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council of Italy (CNR), Bari, Italy.

Brane Leskošek (B)

Faculty of Medicine, Institute for Biostatistics and Medical Informatics (IBMI), University of Ljubljana, Ljubljana, Slovenia.

Jessica M Lindvall (JM)

National Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

Diana Marek (D)

SIB Training, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Paula A Martinez (PA)

VIB Flanders Institute for Biotechnology, VIB Bioinformatics Core, Ghent, Belgium.

Tuur Muyldermans (T)

VIB Flanders Institute for Biotechnology, VIB Bioinformatics Core, Ghent, Belgium.

Ståle Nygård (S)

Department of Informatics, University of Oslo, Oslo, Norway.

Patricia M Palagi (PM)

SIB Training, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Hedi Peterson (H)

Institute of Computer Science, University of Tartu, Tartu, Estonia.

Fotis Psomopoulos (F)

Institute of Applied Biosciences (INAB), Center for Research and Technology Hellas (CERTH), Thessaloniki, Greece.

Vojtech Spiwok (V)

Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Czech Republic.

Celia W G van Gelder (CWG)

DTL Dutch Techcentre for Life Sciences, Utrecht, the Netherlands.

Allegra Via (A)

Institute of Molecular Biology and Pathology (IBPM), National Research Council of Italy (CNR), Rome, Italy.

Marko Vidak (M)

Faculty of Medicine, Institute for Biostatistics and Medical Informatics (IBMI), University of Ljubljana, Ljubljana, Slovenia.

Daniel Wibberg (D)

Genome Research of Industrial Microorganisms, Center for Biotechnology, Bielefeld University, Bielefeld, Germany.

Sarah L Morgan (SL)

EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.

Gabriella Rustici (G)

Department of Genetics, University of Cambridge, Cambridge, United Kingdom.

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Classifications MeSH