Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset.
OnPLS
data integration
joint and unique multiblock analysis (JUMBA)
metabolomics
multi-tissue
multiblock
multiblock orthogonal component analysis (MOCA)
Journal
Metabolites
ISSN: 2218-1989
Titre abrégé: Metabolites
Pays: Switzerland
ID NLM: 101578790
Informations de publication
Date de publication:
17 Jul 2020
17 Jul 2020
Historique:
received:
27
05
2020
revised:
14
07
2020
accepted:
15
07
2020
entrez:
26
7
2020
pubmed:
28
7
2020
medline:
28
7
2020
Statut:
epublish
Résumé
Data integration has been proven to provide valuable information. The information extracted using data integration in the form of multiblock analysis can pinpoint both common and unique trends in the different blocks. When working with small multiblock datasets the number of possible integration methods is drastically reduced. To investigate the application of multiblock analysis in cases where one has a few number of samples and a lack of statistical power, we studied a small metabolomic multiblock dataset containing six blocks (i.e., tissue types), only including common metabolites. We used a single model multiblock analysis method called the joint and unique multiblock analysis (JUMBA) and compared it to a commonly used method, concatenated principal component analysis (PCA). These methods were used to detect trends in the dataset and identify underlying factors responsible for metabolic variations. Using JUMBA, we were able to interpret the extracted components and link them to relevant biological properties. JUMBA shows how the observations are related to one another, the stability of these relationships, and to what extent each of the blocks contribute to the components. These results indicate that multiblock methods can be useful even with a small number of samples.
Identifiants
pubmed: 32709053
pii: metabo10070295
doi: 10.3390/metabo10070295
pmc: PMC7407932
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Vetenskapsrådet
ID : 2016-04376
Organisme : FP7 People: Marie-Curie Actions
ID : no. 238821
Organisme : Vetenskapsrådet
ID : eSSENCE
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