Johan Trygg

Affiliations

Computational Life Science Cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden.

Publications (29)

Ultrasound imaging of dorsal neck muscles with speckle tracking analyses - the relationship between muscle deformation and force.

Scientific reports

Avec: Gunnel Peterson , Shaun O' Leary , David Nilsson , Katherine Moodie , Kylie Tucker , Johan Trygg , Anneli Peolsson

A Machine Vision Approach for Bioreactor Foam Sensing.

SLAS technology

Avec: Jonas Austerjost , Robert Söldner , Christoffer Edlund , Johan Trygg , David Pollard , Rickard Sjögren

Feasibility and performance of cross-clone Raman calibration models in CHO cultivation.

Biotechnology journal

Avec: Rafael Machleid , Marek Hoehse , Steffi Scholze , Kleanthis Mazarakis , David Nilsson , Erik Johansson , Christoph Zehe , Johan Trygg , Christian Grimm , Izabella Surowiec

Structural investigation of cell wall polysaccharides extracted from wild Finnish mushroom Craterellus tubaeformis (Funnel Chanterelle).

Food chemistry

Avec: Gabriele Beltrame , Jani Trygg , Jani Rahkila , Reko Leino , Baoru Yang

Metabolic profiling of zebrafish embryo development from blastula period to early larval stages.

PloS one

Avec: Sundeep S Dhillon , Frida Torell , Magdalena Donten , Katrin Lundstedt-Enkel , Kate Bennett , Stefan Rännar , Johan Trygg , Torbjörn Lundstedt

A geographically matched control population efficiently limits the number of candidate disease-causing variants in an unbiased whole-genome analysis.

PloS one

Avec: Matilda Rentoft , Daniel Svensson , Andreas Sjödin , Pall I Olason , Olle Sjöström , Carin Nylander , Pia Osterman , Rickard Sjögren , Sergiu Netotea , Carl Wibom , Kristina Cederquist , Andrei Chabes , Johan Trygg , Beatrice S Melin , Erik Johansson

Analysis of Plant Cell Walls Using High-Throughput Profiling Techniques with Multivariate Methods.

Methods in molecular biology (Clifton, N.J.)

Avec: John P Moore , Yu Gao , Anscha J J Zietsman , Jonatan U Fangel , Johan Trygg , William G T Willats , Melané A Vivier

Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees.

Biotechnology for biofuels

Avec: Madhavi Latha Gandla , Niklas Mähler , Sacha Escamez , Tomas Skotare , Ogonna Obudulu , Linus Möller , Ilka N Abreu , Joakim Bygdell , Magnus Hertzberg , Torgeir R Hvidsten , Thomas Moritz , Gunnar Wingsle , Johan Trygg , Hannele Tuominen , Leif J Jönsson

Near-infrared hyperspectral image analysis for monitoring the cheese-ripening process.

Journal of dairy science

Avec: Masoumeh Alinaghi , David Nilsson , Nikita Singh , Annika Höjer , Karin Hallin Saedén , Johan Trygg

Application of Multiblock Analysis on Small Metabolomic Multi-Tissue Dataset.

Metabolites

Avec: Frida Torell , Tomas Skotare , Johan Trygg

A whole-genome sequenced control population in northern Sweden reveals subregional genetic differences.

PloS one

Avec: Daniel Svensson , Matilda Rentoft , Anna M Dahlin , Emma Lundholm , Pall I Olason , Andreas Sjödin , Carin Nylander , Beatrice S Melin , Johan Trygg , Erik Johansson

Towards better process management in wastewater treatment plants: Process analytics based on SHAP values for tree-based machine learning methods.

Journal of environmental management

Avec: Dong Wang , Sven Thunéll , Ulrika Lindberg , Lili Jiang , Johan Trygg , Mats Tysklind

Comparison of Polysaccharides Extracted from Cultivated Mycelium of

Journal of fungi (Basel, Switzerland)

Avec: Gabriele Beltrame , Jani Trygg , Jarl Hemming , Zenghua Han , Baoru Yang

A machine learning framework to improve effluent quality control in wastewater treatment plants.

The Science of the total environment

Avec: Dong Wang , Sven Thunéll , Ulrika Lindberg , Lili Jiang , Johan Trygg , Mats Tysklind , Nabil Souihi

Joint and unique multiblock analysis of biological data - multiomics malaria study.

Faraday discussions

Avec: Izabella Surowiec , Tomas Skotare , Rickard Sjögren , Sandra Gouveia-Figueira , Judy Orikiiriza , Sven Bergström , Johan Normark , Johan Trygg

doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows.

BMC bioinformatics

Avec: Daniel Svensson , Rickard Sjögren , David Sundell , Andreas Sjödin , Johan Trygg

Cytokine Profiles in Autoantibody Defined Subgroups of Systemic Lupus Erythematosus.

Journal of proteome research

Avec: Frida Torell , Susanna Eketjäll , Helena Idborg , Per-Johan Jakobsson , Iva Gunnarsson , Elisabet Svenungsson , Johan Trygg

Overexpression of VviPGIP1 and NtCAD14 in Tobacco Screened Using Glycan Microarrays Reveals Cell Wall Reorganisation in the Absence of Fungal Infection.

Vaccines

Avec: Florent Weiller , Lorenz Gerber , Johan Trygg , Jonatan U Fangel , William G T Willats , Azeddine Driouich , Melané A Vivier , John P Moore

LIVECell-A large-scale dataset for label-free live cell segmentation.

Nature methods

Avec: Christoffer Edlund , Timothy R Jackson , Nabeel Khalid , Nicola Bevan , Timothy Dale , Andreas Dengel , Sheraz Ahmed , Johan Trygg , Rickard Sjögren

Model-based intensification of CHO cell cultures: One-step strategy from fed-batch to perfusion.

Frontiers in bioengineering and biotechnology

Avec: Anne Richelle , Brandon Corbett , Piyush Agarwal , Anton Vernersson , Johan Trygg , Chris McCready

Hierarchical time-series analysis of dynamic bioprocess systems.

Biotechnology journal

Avec: Masoumeh Alinaghi , Izabella Surowiec , Steffi Scholze , Chris McCready , Christoph Zehe , Erik Johansson , Johan Trygg , Olivier Cloarec

Joint and Unique Multiblock Analysis for Integration and Calibration Transfer of NIR Instruments.

Analytical chemistry

Avec: Tomas Skotare , David Nilsson , Shaojun Xiong , Paul Geladi , Johan Trygg

Multiblock variable influence on orthogonal projections (MB-VIOP) for enhanced interpretation of total, global, local and unique variations in OnPLS models.

BMC bioinformatics

Avec: Beatriz Galindo-Prieto , Paul Geladi , Johan Trygg

MirLocPredictor: A ConvNet-Based Multi-Label MicroRNA Subcellular Localization Predictor by Incorporating k-Mer Positional Information.

Genes

Avec: Muhammad Nabeel Asim , Muhammad Imran Malik , Christoph Zehe , Johan Trygg , Andreas Dengel , Sheraz Ahmed

Serine Protease Inhibitors Restrict Host Susceptibility to SARS-CoV-2 Infections.

mBio

Avec: Ebba Rosendal , Ionut Sebastian Mihai , Miriam Becker , Debojyoti Das , Lars Frängsmyr , B David Persson , Gregory D Rankin , Remigius Gröning , Johan Trygg , Mattias Forsell , Johan Ankarklev , Anders Blomberg , Johan Henriksson , Anna K Överby , Annasara Lenman

Perinatal risk factors for mortality in very preterm infants-A nationwide, population-based discriminant analysis.

Acta paediatrica (Oslo, Norway : 1992)

Avec: Mikael Norman , David Nilsson , Johan Trygg , Stellan Håkansson

Statistical analysis in metabolic phenotyping.

Nature protocols

Avec: Benjamin J Blaise , Gonçalo D S Correia , Gordon A Haggart , Izabella Surowiec , Caroline Sands , Matthew R Lewis , Jake T M Pearce , Johan Trygg , Jeremy K Nicholson , Elaine Holmes , Timothy M D Ebbels

EL-RMLocNet: An explainable LSTM network for RNA-associated multi-compartment localization prediction.

Computational and structural biotechnology journal

Avec: Muhammad Nabeel Asim , Muhammad Ali Ibrahim , Muhammad Imran Malik , Christoph Zehe , Olivier Cloarec , Johan Trygg , Andreas Dengel , Sheraz Ahmed

BoT-Net: a lightweight bag of tricks-based neural network for efficient LncRNA-miRNA interaction prediction.

Interdisciplinary sciences, computational life sciences

Avec: Muhammad Nabeel Asim , Muhammad Ali Ibrahim , Christoph Zehe , Johan Trygg , Andreas Dengel , Sheraz Ahmed

Réseau de co-auteurs

David Nilsson 5 collaborations

Rickard Sjögren 5 collaborations

Christoph Zehe 5 collaborations

Erik Johansson 4 collaborations

Izabella Surowiec 4 collaborations

Tomas Skotare 4 collaborations

Andreas Dengel 4 collaborations

Sheraz Ahmed 4 collaborations

Frida Torell 3 collaborations

Daniel Svensson 3 collaborations

Andreas Sjödin 3 collaborations

Muhammad Nabeel Asim 3 collaborations

Christoffer Edlund 2 collaborations

Steffi Scholze 2 collaborations

Gabriele Beltrame 2 collaborations

Jani Trygg 2 collaborations

Baoru Yang 2 collaborations

Matilda Rentoft 2 collaborations

Pall I Olason 2 collaborations

Carin Nylander 2 collaborations

Beatrice S Melin 2 collaborations

John P Moore 2 collaborations

Jonatan U Fangel 2 collaborations

William G T Willats 2 collaborations

Melané A Vivier 2 collaborations

Masoumeh Alinaghi 2 collaborations

Dong Wang 2 collaborations

Sven Thunéll 2 collaborations

Ulrika Lindberg 2 collaborations

Lili Jiang 2 collaborations

Mats Tysklind 2 collaborations

Chris McCready 2 collaborations

Olivier Cloarec 2 collaborations

Paul Geladi 2 collaborations

Muhammad Imran Malik 2 collaborations

Muhammad Ali Ibrahim 2 collaborations

Gunnel Peterson 1 collaboration

Shaun O' Leary 1 collaboration

Katherine Moodie 1 collaboration

Kylie Tucker 1 collaboration

Anneli Peolsson 1 collaboration

Jonas Austerjost 1 collaboration

Robert Söldner 1 collaboration

David Pollard 1 collaboration

Rafael Machleid 1 collaboration

Marek Hoehse 1 collaboration

Kleanthis Mazarakis 1 collaboration

Christian Grimm 1 collaboration

Jani Rahkila 1 collaboration

Reko Leino 1 collaboration

Sundeep S Dhillon 1 collaboration

Magdalena Donten 1 collaboration

Katrin Lundstedt-Enkel 1 collaboration

Kate Bennett 1 collaboration

Stefan Rännar 1 collaboration

Torbjörn Lundstedt 1 collaboration

Olle Sjöström 1 collaboration

Pia Osterman 1 collaboration

Sergiu Netotea 1 collaboration

Carl Wibom 1 collaboration

Kristina Cederquist 1 collaboration

Andrei Chabes 1 collaboration

Yu Gao 1 collaboration

Anscha J J Zietsman 1 collaboration

Madhavi Latha Gandla 1 collaboration

Niklas Mähler 1 collaboration

Sacha Escamez 1 collaboration

Ogonna Obudulu 1 collaboration

Linus Möller 1 collaboration

Ilka N Abreu 1 collaboration

Joakim Bygdell 1 collaboration

Magnus Hertzberg 1 collaboration

Torgeir R Hvidsten 1 collaboration

Thomas Moritz 1 collaboration

Gunnar Wingsle 1 collaboration

Hannele Tuominen 1 collaboration

Leif J Jönsson 1 collaboration

Nikita Singh 1 collaboration

Annika Höjer 1 collaboration

Karin Hallin Saedén 1 collaboration

Anna M Dahlin 1 collaboration

Emma Lundholm 1 collaboration

Jarl Hemming 1 collaboration

Zenghua Han 1 collaboration

Nabil Souihi 1 collaboration

Sandra Gouveia-Figueira 1 collaboration

Judy Orikiiriza 1 collaboration

Sven Bergström 1 collaboration

Johan Normark 1 collaboration

David Sundell 1 collaboration

Susanna Eketjäll 1 collaboration

Helena Idborg 1 collaboration

Per-Johan Jakobsson 1 collaboration

Iva Gunnarsson 1 collaboration

Elisabet Svenungsson 1 collaboration

Florent Weiller 1 collaboration

Lorenz Gerber 1 collaboration

Azeddine Driouich 1 collaboration

Timothy R Jackson 1 collaboration

Nabeel Khalid 1 collaboration

Nicola Bevan 1 collaboration

Timothy Dale 1 collaboration

Anne Richelle 1 collaboration

Brandon Corbett 1 collaboration

Piyush Agarwal 1 collaboration

Anton Vernersson 1 collaboration

Shaojun Xiong 1 collaboration

Beatriz Galindo-Prieto 1 collaboration

Ebba Rosendal 1 collaboration

Ionut Sebastian Mihai 1 collaboration

Miriam Becker 1 collaboration

Debojyoti Das 1 collaboration

Lars Frängsmyr 1 collaboration

B David Persson 1 collaboration

Gregory D Rankin 1 collaboration

Remigius Gröning 1 collaboration

Mattias Forsell 1 collaboration

Johan Ankarklev 1 collaboration

Anders Blomberg 1 collaboration

Johan Henriksson 1 collaboration

Anna K Överby 1 collaboration

Annasara Lenman 1 collaboration

Mikael Norman 1 collaboration

Stellan Håkansson 1 collaboration

Benjamin J Blaise 1 collaboration

Gonçalo D S Correia 1 collaboration

Gordon A Haggart 1 collaboration

Caroline Sands 1 collaboration

Matthew R Lewis 1 collaboration

Jake T M Pearce 1 collaboration

Jeremy K Nicholson 1 collaboration

Elaine Holmes 1 collaboration

Timothy M D Ebbels 1 collaboration