Transcriptome view of a killer: African swine fever virus.
African swine fever virus
RNA polymerase
RNA sequencing
gene expression and regulation
transcription
virology
Journal
Biochemical Society transactions
ISSN: 1470-8752
Titre abrégé: Biochem Soc Trans
Pays: England
ID NLM: 7506897
Informations de publication
Date de publication:
28 08 2020
28 08 2020
Historique:
received:
31
05
2020
revised:
01
07
2020
accepted:
03
07
2020
pubmed:
30
7
2020
medline:
2
6
2021
entrez:
30
7
2020
Statut:
ppublish
Résumé
African swine fever virus (ASFV) represents a severe threat to global agriculture with the world's domestic pig population reduced by a quarter following recent outbreaks in Europe and Asia. Like other nucleocytoplasmic large DNA viruses, ASFV encodes a transcription apparatus including a eukaryote-like RNA polymerase along with a combination of virus-specific, and host-related transcription factors homologous to the TATA-binding protein (TBP) and TFIIB. Despite its high impact, the molecular basis and temporal regulation of ASFV transcription is not well understood. Our lab recently applied deep sequencing approaches to characterise the viral transcriptome and gene expression during early and late ASFV infection. We have characterised the viral promoter elements and termination signatures, by mapping the RNA-5' and RNA-3' termini at single nucleotide resolution. In this review, we discuss the emerging field of ASFV transcripts, transcription, and transcriptomics.
Identifiants
pubmed: 32725217
pii: 225921
doi: 10.1042/BST20191108
pmc: PMC7458399
doi:
Substances chimiques
Transcription Factors
0
Untranslated Regions
0
DNA-Directed RNA Polymerases
EC 2.7.7.6
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
1569-1581Subventions
Organisme : Wellcome Trust
ID : WT 207446/Z/17/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT 108877/B/15/Z
Pays : United Kingdom
Informations de copyright
© 2020 The Author(s).
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