Genome-wide assessment of genetic diversity, linkage disequilibrium and haplotype block structure in Tharparkar cattle breed of India.

Animals Cattle / genetics Genotype Haplotypes Homozygote India Linkage Disequilibrium Polymorphism, Single Nucleotide / genetics
ROH SNP Tharparkar cattle genetic diversity haplotype blocks linkage disequilibrium

Journal

Animal biotechnology
ISSN: 1532-2378
Titre abrégé: Anim Biotechnol
Pays: England
ID NLM: 9011409

Informations de publication

Date de publication:
Apr 2022
Historique:
pubmed: 31 7 2020
medline: 8 4 2022
entrez: 31 7 2020
Statut: ppublish

Résumé

Knowledge about genetic diversity is very essential for the management and sustainable utilization of livestock genetic resources. In this study, we presented a comprehensive genome-wide analysis of genetic diversity, ROH, inbreeding, linkage disequilibrium, effective population size and haplotype block structure in Tharparkar cattle of India. A total of 24 Tharparkar animals used in this study were genotyped with Illumina BovineSNP50 array. After quality control, 22,825 biallelic SNPs were retained, which were in HWE, MAF > 0.05 and genotyping rate >90%. The overall mean observed (H

Identifiants

DOI: 10.1080/10495398.2020.1796696 PMID: 32730141
pubmed: 32730141
doi: 10.1080/10495398.2020.1796696
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

297-311

Auteurs

K A Saravanan (KA)

Division of Animal Genetics, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

Manjit Panigrahi (M)

Division of Animal Genetics, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.
ORCID: 0000-0002-8578-2325

Harshit Kumar (H)

Division of Animal Genetics, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

Subhashree Parida (S)

Division of Pharmacology and Toxicology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

Bharat Bhushan (B)

Division of Animal Genetics, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

G K Gaur (GK)

Division of Animal Genetics, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

Pushpendra Kumar (P)

Division of Animal Genetics, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

Triveni Dutt (T)

Livestock Production and Management Section, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

B P Mishra (BP)

Division of Animal Biotechnology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

R K Singh (RK)

Division of Animal Biotechnology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Genome-wide assessment of genetic diversity,...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Artiodactyla › Ruminants › Bovins › Genome-wide assessment of genetic diversity,...
questionsmedicales.fr › Phénomènes génétiques › Génotype › Genome-wide assessment of genetic diversity,...
questionsmedicales.fr › Phénomènes génétiques › Génotype › Haplotypes › Genome-wide assessment of genetic diversity,...
questionsmedicales.fr › Phénomènes génétiques › Génotype › Homozygote › Genome-wide assessment of genetic diversity,...
questionsmedicales.fr › Régions géographiques › Asie › Asie de l'Ouest › Asie du Sud › Inde › Genome-wide assessment of genetic diversity,...
questionsmedicales.fr › Phénomènes génétiques › Liaison génétique › Déséquilibre de liaison › Genome-wide assessment of genetic diversity,...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Polymorphisme génétique › Polymorphisme de nucléotide simple › Genome-wide assessment of genetic diversity,...