The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
STEC
Shiga toxin-producing Escherichia coli
WGS
food safety
foodborne outbreak investigation
surveillance
whole genome sequencing
Journal
Foods (Basel, Switzerland)
ISSN: 2304-8158
Titre abrégé: Foods
Pays: Switzerland
ID NLM: 101670569
Informations de publication
Date de publication:
01 Aug 2020
01 Aug 2020
Historique:
received:
14
07
2020
revised:
24
07
2020
accepted:
27
07
2020
entrez:
6
8
2020
pubmed:
6
8
2020
medline:
6
8
2020
Statut:
epublish
Résumé
Gradually, conventional methods for foodborne pathogen typing are replaced by whole genome sequencing (WGS). Despite studies describing the overall benefits, National Reference Laboratories of smaller countries often show slower uptake of WGS, mainly because of significant investments required to generate and analyze data of a limited amount of samples. To facilitate this process and incite policy makers to support its implementation, a Shiga toxin-producing
Identifiants
pubmed: 32752159
pii: foods9081030
doi: 10.3390/foods9081030
pmc: PMC7466227
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Sciensano
ID : contract RP .Be READY
Organisme : Belgian Federal Public Service of Health, Food Chain Safety and Environment
ID : RF 17/6316 StEQIDEMIC.be
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