A citizen science initiative for open data and visualization of COVID-19 outbreak in Kerala, India.


Journal

Journal of the American Medical Informatics Association : JAMIA
ISSN: 1527-974X
Titre abrégé: J Am Med Inform Assoc
Pays: England
ID NLM: 9430800

Informations de publication

Date de publication:
09 12 2020
Historique:
received: 18 05 2020
accepted: 05 08 2020
pubmed: 8 8 2020
medline: 23 12 2020
entrez: 8 8 2020
Statut: ppublish

Résumé

India reported its first coronavirus disease 2019 (COVID-19) case in the state of Kerala and an outbreak initiated subsequently. The Department of Health Services, Government of Kerala, initially released daily updates through daily textual bulletins for public awareness to control the spread of the disease. However, these unstructured data limit upstream applications, such as visualization, and analysis, thus demanding refinement to generate open and reusable datasets. Through a citizen science initiative, we leveraged publicly available and crowd-verified data on COVID-19 outbreak in Kerala from the government bulletins and media outlets to generate reusable datasets. This was further visualized as a dashboard through a front-end Web application and a JSON (JavaScript Object Notation) repository, which serves as an application programming interface for the front end. From the sourced data, we provided real-time analysis, and daily updates of COVID-19 cases in Kerala, through a user-friendly bilingual dashboard (https://covid19kerala.info/) for nonspecialists. To ensure longevity and reusability, the dataset was deposited in an open-access public repository for future analysis. Finally, we provide outbreak trends and demographic characteristics of the individuals affected with COVID-19 in Kerala during the first 138 days of the outbreak. We anticipate that our dataset can form the basis for future studies, supplemented with clinical and epidemiological data from the individuals affected with COVID-19 in Kerala. We reported a citizen science initiative on the COVID-19 outbreak in Kerala to collect and deposit data in a structured format, which was utilized for visualizing the outbreak trend and describing demographic characteristics of affected individuals.

Identifiants

pubmed: 32761211
pii: 5882022
doi: 10.1093/jamia/ocaa203
pmc: PMC7454688
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1913-1920

Informations de copyright

© The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.

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Auteurs

Jijo Pulickiyil Ulahannan (JP)

Department of Physics, Government College Kasaragod, Kannur University, Kannur, India.

Nikhil Narayanan (N)

Open Data Researcher, Bengaluru, India.

Nishad Thalhath (N)

School of Library, Information and Media Studies, University of Tsukuba, Tsukuba, Japan.

Prem Prabhakaran (P)

Department of Advanced Materials and Chemical Engineering, Hannam University, Daejeon, South Korea.

Sreekanth Chaliyeduth (S)

Centre for Cognitive and Brain Sciences, Indian Institute of Technology Gandhinagar, Gandhinagar, India.

Sooraj P Suresh (SP)

Department of Humanities and Social Sciences, National Institute of Technology Tiruchirappalli, Tiruchirappalli, India.

Musfir Mohammed (M)

Embedded Analytics, ML and Data Sciences, Experion Technologies, Thiruvananthapuram, India.

E Rajeevan (E)

Department of Philosophy, Government Brennen College, Kannur University, Kannur, India.

Sindhu Joseph (S)

Department of Travel and Tourism Management, Govinda Pai Memorial Government College, Kannur University, Kannur, India.

Akhil Balakrishnan (A)

Software Research and Development Team, Crowcon, Bengaluru, India.

Jeevan Uthaman (J)

Department of Marine Geophysics, Cochin University of Science and Technology, Kochi, India.

Manoj Karingamadathil (M)

Swathanthra Malayalam Computing, Thrissur, India.

Sunil Thonikkuzhiyil Thomas (ST)

Department of Electronics, College of Engineering Attingal, APJ Abdul Kalam Technical University, Thiruvananthapuram, India.

Unnikrishnan Sureshkumar (U)

Astronomical Observatory of the Jagiellonian University, Faculty of Physics, Astronomy and Applied Science, Jagiellonian University, Kraków, Poland.

Shabeesh Balan (S)

Laboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Japan.

Neetha Nanoth Vellichirammal (NN)

Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska, USA.

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