Accurate detection of spontaneous seizures using a generalized linear model with external validation.
Animals
Area Under Curve
Disease Models, Animal
Electrocorticography
/ methods
Electroencephalography
Epilepsies, Partial
/ diagnosis
Excitatory Amino Acid Agonists
/ toxicity
Kainic Acid
/ toxicity
Linear Models
Machine Learning
ROC Curve
Rats
Reproducibility of Results
Seizures
/ chemically induced
Signal Processing, Computer-Assisted
focal epilepsy
machine learning
model validation
quantitative EEG
seizure detection
Journal
Epilepsia
ISSN: 1528-1167
Titre abrégé: Epilepsia
Pays: United States
ID NLM: 2983306R
Informations de publication
Date de publication:
09 2020
09 2020
Historique:
received:
21
08
2019
revised:
02
07
2020
accepted:
02
07
2020
pubmed:
8
8
2020
medline:
26
1
2021
entrez:
8
8
2020
Statut:
ppublish
Résumé
Seizure detection is a major facet of electroencephalography (EEG) analysis in neurocritical care, epilepsy diagnosis and management, and the instantiation of novel therapies such as closed-loop stimulation or optogenetic control of seizures. It is also of increased importance in high-throughput, robust, and reproducible pre-clinical research. However, seizure detectors are not widely relied upon in either clinical or research settings due to limited validation. In this study, we create a high-performance seizure-detection approach, validated in multiple data sets, with the intention that such a system could be available to users for multiple purposes. We introduce a generalized linear model trained on 141 EEG signal features for classification of seizures in continuous EEG for two data sets. In the first (Focal Epilepsy) data set consisting of 16 rats with focal epilepsy, we collected 1012 spontaneous seizures over 3 months of 24/7 recording. We trained a generalized linear model on the 141 features representing 20 feature classes, including univariate and multivariate, linear and nonlinear, time, and frequency domains. We tested performance on multiple hold-out test data sets. We then used the trained model in a second (Multifocal Epilepsy) data set consisting of 96 rats with 2883 spontaneous multifocal seizures. From the Focal Epilepsy data set, we built a pooled classifier with an Area Under the Receiver Operating Characteristic (AUROC) of 0.995 and leave-one-out classifiers with an AUROC of 0.962. We validated our method within the independently constructed Multifocal Epilepsy data set, resulting in a pooled AUROC of 0.963. We separately validated a model trained exclusively on the Focal Epilepsy data set and tested on the held-out Multifocal Epilepsy data set with an AUROC of 0.890. Latency to detection was under 5 seconds for over 80% of seizures and under 12 seconds for over 99% of seizures. This method achieves the highest performance published for seizure detection on multiple independent data sets. This method of seizure detection can be applied to automated EEG analysis pipelines as well as closed loop interventional approaches, and can be especially useful in the setting of research using animals in which there is an increased need for standardization and high-throughput analysis of large number of seizures.
Identifiants
pubmed: 32761902
doi: 10.1111/epi.16628
pmc: PMC7953845
mid: NIHMS1642491
doi:
Substances chimiques
Excitatory Amino Acid Agonists
0
Kainic Acid
SIV03811UC
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1906-1918Subventions
Organisme : Paul and Daisy Soros Fellowships for New Americans
Pays : International
Organisme : NIMH NIH HHS
ID : K08 MH116135
Pays : United States
Organisme : NIDA NIH HHS
ID : HHSN271201600048C
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS062092
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM007753
Pays : United States
Organisme : NINDS NIH HHS
ID : K24 NS088568
Pays : United States
Organisme : Harvard Medical Scientist Training Program
Pays : International
Organisme : NIMH NIH HHS
ID : T32 MH020017
Pays : United States
Organisme : Fondation Bertarelli
Pays : International
Organisme : NINDS NIH HHS
ID : F31 NS105161
Pays : United States
Organisme : NIA NIH HHS
ID : R03 AG050878
Pays : United States
Informations de copyright
© 2020 International League Against Epilepsy.
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