MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context.
Data Visualization
Metabolic Maps
Metabolism
Omics Data
Pathways
SVG
Systems Biology
Journal
F1000Research
ISSN: 2046-1402
Titre abrégé: F1000Res
Pays: England
ID NLM: 101594320
Informations de publication
Date de publication:
2020
2020
Historique:
accepted:
17
04
2020
entrez:
9
8
2020
pubmed:
9
8
2020
medline:
17
3
2021
Statut:
epublish
Résumé
Metabolic pathways are an important part of systems biology research since they illustrate complex interactions between metabolites, enzymes, and regulators. Pathway maps are drawn to elucidate metabolism or to set data in a metabolic context. We present MetaboMAPS, a web-based platform to visualize numerical data on individual metabolic pathway maps. Metabolic maps can be stored, distributed and downloaded in SVG-format. MetaboMAPS was designed for users without computational background and supports pathway sharing without strict conventions. In addition to existing applications that established standards for well-studied pathways, MetaboMAPS offers a niche for individual, customized pathways beyond common knowledge, supporting ongoing research by creating publication-ready visualizations of experimental data.
Identifiants
pubmed: 32765840
doi: 10.12688/f1000research.23427.1
pmc: PMC7383707
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
288Informations de copyright
Copyright: © 2020 Koblitz J et al.
Déclaration de conflit d'intérêts
No competing interests were disclosed.