Spatially localized sparse representations for breast lesion characterization.


Journal

Computers in biology and medicine
ISSN: 1879-0534
Titre abrégé: Comput Biol Med
Pays: United States
ID NLM: 1250250

Informations de publication

Date de publication:
08 2020
Historique:
received: 27 03 2020
revised: 02 07 2020
accepted: 11 07 2020
entrez: 10 8 2020
pubmed: 10 8 2020
medline: 22 6 2021
Statut: ppublish

Résumé

The topic of sparse representation of samples in high dimensional spaces has attracted growing interest during the past decade. In this work, we develop sparse representation-based methods for classification of radiological imaging patterns of breast lesions into benign and malignant states. We propose a spatial block decomposition method to address irregularities of the approximation problem and to build an ensemble of classifiers (CL) that we expect to yield more accurate numerical solutions than conventional whole-region of interest (ROI) sparse analyses. We introduce two classification decision strategies based on maximum a posteriori probability (BBMAP-S), or a log likelihood function (BBLL-S). To evaluate the performance of the proposed approach we used cross-validation techniques on imaging datasets with disease class labels. We utilized the proposed approach for separation of breast lesions into benign and malignant categories in mammograms. The level of difficulty is high in this application and the accuracy may depend on the lesion size. Our results indicate that the proposed integrative sparse analysis addresses the ill-posedness of the approximation problem, producing AUC (area under the receiver operating curve) value of 89.1% for randomized 30-fold cross-validation. Furthermore, our comparative experiments showed that the BBLL-S decision function may yield more accurate classification than BBMAP-S because BBLL-S accounts for possible estimation bias.

Identifiants

pubmed: 32768050
pii: S0010-4825(20)30257-2
doi: 10.1016/j.compbiomed.2020.103914
pmc: PMC7416513
mid: NIHMS1613625
pii:
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

103914

Subventions

Organisme : NIGMS NIH HHS
ID : SC3 GM113754
Pays : United States

Informations de copyright

Copyright © 2020 Elsevier Ltd. All rights reserved.

Références

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:1034-1037
pubmed: 28268501
Comput Math Methods Med. 2017;2017:3781951
pubmed: 29463985
Adv Surg. 2010;44:87-100
pubmed: 20919516
J Med Syst. 2017 Feb;41(2):26
pubmed: 28005248
IEEE Trans Image Process. 2008 Jan;17(1):53-69
pubmed: 18229804
Comput Methods Programs Biomed. 2018 Apr;157:19-30
pubmed: 29477427
Med Image Anal. 2010 Apr;14(2):87-110
pubmed: 20071209
Med Image Anal. 2017 Dec;42:60-88
pubmed: 28778026
Comput Math Methods Med. 2015;2015:567932
pubmed: 25821509
Methods. 2017 Dec 1;131:128-134
pubmed: 28716511
IEEE Trans Pattern Anal Mach Intell. 2009 Feb;31(2):210-27
pubmed: 19110489
J Med Syst. 2016 Apr;40(4):105
pubmed: 26892455
J Digit Imaging. 2010 Oct;23(5):527-37
pubmed: 19506953
Comput Biol Med. 2019 Jul;110:244-253
pubmed: 31233970
IEEE J Biomed Health Inform. 2018 May;22(3):826-834
pubmed: 28622679
Comput Biol Med. 2019 Nov;114:103422
pubmed: 31521895
Acad Radiol. 2012 Feb;19(2):236-48
pubmed: 22078258
J Digit Imaging. 2011 Jun;24(3):500-6
pubmed: 20480383
Comput Biol Med. 2016 Feb 1;69:97-111
pubmed: 26761591
Comput Methods Programs Biomed. 2014 Apr;114(1):88-101
pubmed: 24513228
PLoS One. 2015 Jul 15;10(7):e0131968
pubmed: 26177106
J Med Imaging (Bellingham). 2016 Jul;3(3):034501
pubmed: 27610399

Auteurs

Keni Zheng (K)

Division of Physics, Engineering, Mathematics and Computer Science, Delaware State University, 1200 N. DuPont Hwy, Dover, DE, 19901-2277, USA.

Chelsea Harris (C)

Division of Physics, Engineering, Mathematics and Computer Science, Delaware State University, 1200 N. DuPont Hwy, Dover, DE, 19901-2277, USA.

Predrag Bakic (P)

Department of Radiology, Univ. of Pennsylvania, Philadelphia, PA, 19152, USA.

Sokratis Makrogiannis (S)

Division of Physics, Engineering, Mathematics and Computer Science, Delaware State University, 1200 N. DuPont Hwy, Dover, DE, 19901-2277, USA. Electronic address: smakrogiannis@desu.edu.

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Classifications MeSH