Gelling without Structuring: A SAXS Study of the Interactions among DNA Nanostars.


Journal

Langmuir : the ACS journal of surfaces and colloids
ISSN: 1520-5827
Titre abrégé: Langmuir
Pays: United States
ID NLM: 9882736

Informations de publication

Date de publication:
08 09 2020
Historique:
pubmed: 14 8 2020
medline: 22 6 2021
entrez: 14 8 2020
Statut: ppublish

Résumé

We evaluate, by means of synchrotron small-angle X-ray scattering, the shape and mutual interactions of DNA tetravalent nanostars as a function of temperature in both the gas-like state and across the gel transition. To this end, we calculate the form factor from coarse-grained molecular dynamics simulations with a novel method that includes hydration effects; we approximate the radial interaction of DNA nanostars as a hard-sphere potential complemented by a repulsive and an attractive Yukawa term; and we predict the structure factors by exploiting the perturbative random phase approximation of the Percus-Yevick equation. Our approach enables us to fit all the data by selecting the particle radius and the width and amplitude of the attractive potential as free parameters. We determine the evolution of the structure factor across gelation and detect subtle changes of the effective interparticle interactions, that we associate to the temperature and concentration dependence of the particle size. Despite the approximations, the approach here adopted offers new detailed insights into the structure and interparticle interactions of this fascinating system.

Identifiants

pubmed: 32787014
doi: 10.1021/acs.langmuir.0c01520
pmc: PMC8010795
doi:

Substances chimiques

Colloids 0
Gels 0
DNA 9007-49-2

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

10387-10396

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Auteurs

Francesco Spinozzi (F)

Department of Life and Environmental Sciences, Polytechnic University of Marche, 60131 Ancona, Italy.

Maria Grazia Ortore (MG)

Department of Life and Environmental Sciences, Polytechnic University of Marche, 60131 Ancona, Italy.

Giovanni Nava (G)

Department of Medical Biotechnology and Translational Medicine, Università degli Studi di Milano, 20133 Milan, Italy.

Francesca Bomboi (F)

Department of Physics, Sapienza, Università di Roma, 00185 Rome, Italy.

Federica Carducci (F)

Department of Life and Environmental Sciences, Polytechnic University of Marche, 60131 Ancona, Italy.

Heinz Amenitsch (H)

Institute for Inorganic Chemistry, Graz University of Technology, 8010 Graz, Austria.

Tommaso Bellini (T)

Department of Medical Biotechnology and Translational Medicine, Università degli Studi di Milano, 20133 Milan, Italy.

Francesco Sciortino (F)

Department of Physics, Sapienza, Università di Roma, 00185 Rome, Italy.

Paolo Mariani (P)

Department of Life and Environmental Sciences, Polytechnic University of Marche, 60131 Ancona, Italy.

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Classifications MeSH