Viral manipulation of functionally distinct interneurons in mice, non-human primates and humans.


Journal

Nature neuroscience
ISSN: 1546-1726
Titre abrégé: Nat Neurosci
Pays: United States
ID NLM: 9809671

Informations de publication

Date de publication:
12 2020
Historique:
received: 20 12 2019
accepted: 10 07 2020
pubmed: 19 8 2020
medline: 9 2 2021
entrez: 19 8 2020
Statut: ppublish

Résumé

Recent success in identifying gene-regulatory elements in the context of recombinant adeno-associated virus vectors has enabled cell-type-restricted gene expression. However, within the cerebral cortex these tools are largely limited to broad classes of neurons. To overcome this limitation, we developed a strategy that led to the identification of multiple new enhancers to target functionally distinct neuronal subtypes. By investigating the regulatory landscape of the disease gene Scn1a, we discovered enhancers selective for parvalbumin (PV) and vasoactive intestinal peptide-expressing interneurons. Demonstrating the functional utility of these elements, we show that the PV-specific enhancer allowed for the selective targeting and manipulation of these neurons across vertebrate species, including humans. Finally, we demonstrate that our selection method is generalizable and characterizes additional PV-specific enhancers with exquisite specificity within distinct brain regions. Altogether, these viral tools can be used for cell-type-specific circuit manipulation and hold considerable promise for use in therapeutic interventions.

Identifiants

pubmed: 32807948
doi: 10.1038/s41593-020-0692-9
pii: 10.1038/s41593-020-0692-9
pmc: PMC8015416
mid: NIHMS1682740
doi:

Substances chimiques

NAV1.1 Voltage-Gated Sodium Channel 0
Parvalbumins 0
Scn1a protein, mouse 0
Vasoactive Intestinal Peptide 37221-79-7

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1629-1636

Subventions

Organisme : NINDS NIH HHS
ID : P01 NS074972
Pays : United States
Organisme : NINDS NIH HHS
ID : R37 NS046579
Pays : United States
Organisme : NIMH NIH HHS
ID : P50 MH094271
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH071679
Pays : United States
Organisme : NIMH NIH HHS
ID : UG3 MH120096
Pays : United States
Organisme : NIMH NIH HHS
ID : R37 MH071679
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS081297
Pays : United States
Organisme : NINDS NIH HHS
ID : K99 NS106528
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH111529
Pays : United States

Commentaires et corrections

Type : CommentIn
Type : ErratumIn

Références

Skene, N. G. et al. Genetic identification of brain cell types underlying schizophrenia. Nat. Genet. 50, 825–833 (2018).
pubmed: 29785013 pmcid: 6477180 doi: 10.1038/s41588-018-0129-5
Voineagu, I. et al. Transcriptomic analysis of autistic brain reveals convergent molecular pathology. Nature 474, 380–384 (2011).
pubmed: 21614001 pmcid: 3607626 doi: 10.1038/nature10110
Parikshak, N. N. et al. Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism. Cell 155, 1008–1021 (2013).
pubmed: 24267887 pmcid: 3934107 doi: 10.1016/j.cell.2013.10.031
Camp, J. G., Platt, R. & Treutlein, B. Mapping human cell phenotypes to genotypes with single-cell genomics. Science 365, 1401–1405 (2019).
pubmed: 31604266 doi: 10.1126/science.aax6648
Bedbrook, C. N., Deverman, B. E. & Gradinaru, V. Viral strategies for targeting the central and peripheral nervous systems. Annu. Rev. Neurosci. 41, 323–348 (2018).
pubmed: 29709207 doi: 10.1146/annurev-neuro-080317-062048
Dimidschstein, J. et al. A viral strategy for targeting and manipulating interneurons across vertebrate species. Nat. Neurosci. 12, 1743–1749 (2016).
doi: 10.1038/nn.4430
Hrvatin, S. et al. A scalable platform for the development of cell-type-specific viral drivers. eLife 8, e48089 (2019).
pubmed: 31545165 pmcid: 6776442 doi: 10.7554/eLife.48089
Deverman, B. E., Ravina, B. M., Bankiewicz, K. S., Paul, S. M. & Sah, D. W. Y. Gene therapy for neurological disorders: progress and prospects. Nat. Rev. Drug Discov. 9, 641–659 (2018).
doi: 10.1038/nrd.2018.110
de Leeuw, C. N. et al. rAAV-compatible mini-romoters for restricted expression in the brain and eye. Mol. Brain 9, 52 (2016).
pubmed: 27164903 pmcid: 4862195 doi: 10.1186/s13041-016-0232-4
Jüttner, J. et al. Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates and humans. Nat. Neurosci. 22, 1345–1356 (2019).
pubmed: 31285614 doi: 10.1038/s41593-019-0431-2
Blankvoort, S., Witter, M. P., Noonan, J., Cotney, J. & Kentros, C. Marked diversity of unique cortical enhancers enables neuron-specific tools by enhancer-driven gene expression. Curr. Biol. 13, 2103–2114 (2018).
doi: 10.1016/j.cub.2018.05.015
Mehta, P. et al. Functional access to neuron subclasses in rodent and primate forebrain. Cell Rep. 26, 2818–2832 (2019).
pubmed: 30840900 pmcid: 6509701 doi: 10.1016/j.celrep.2019.02.011
Griffin, A. et al. Preclinical animal models for dravet syndrome: seizure phenotypes, comorbidities and drug screening. Front. Pharmacol. 9, 573 (2018).
pubmed: 29915537 pmcid: 5994396 doi: 10.3389/fphar.2018.00573
Ogiwara, I. et al. Nav1.1 localizes to axons of parvalbumin-positive inhibitory interneurons: a circuit basis for epileptic seizures in mice carrying an Scn1a gene mutation. J. Neurosci. 27, 5903–5914 (2007).
pubmed: 17537961 pmcid: 6672241 doi: 10.1523/JNEUROSCI.5270-06.2007
Favero, M., Sotuyo, N. P., Lopez, E., Kearney, J. A. & Goldberg, E. M. A transient developmental window of fast-spiking interneuron dysfunction in a mouse model of Dravet syndrome. J. Neurosci. 38, 7912–7927 (2018).
pubmed: 30104343 pmcid: 6125809 doi: 10.1523/JNEUROSCI.0193-18.2018
Goff, K. M. & Goldberg, E. M. Vasoactive intestinal peptide-expressing interneurons are impaired in a mouse model of Dravet syndrome. eLife 8, e46846 (2019).
pubmed: 31282864 pmcid: 6629374 doi: 10.7554/eLife.46846
Cheah, C. S. et al. Specific deletion of Nav1.1 sodium channels in inhibitory interneurons causes seizures and premature death in a mouse model of Dravet syndrome. Proc. Natl Acad. Sci. USA 109, 14646–14651 (2012).
pubmed: 22908258 pmcid: 3437823 doi: 10.1073/pnas.1211591109
Dutton, S. B. et al. Preferential inactivation of Scn1a in parvalbumin interneurons increases seizure susceptibility. Neurobiol. Dis. 49, 211–220 (2013).
pubmed: 22926190 doi: 10.1016/j.nbd.2012.08.012
Yu, F. H. et al. Reduced sodium current in GABAergic interneurons in a mouse model of severe myoclonic epilepsy in infancy. Nat. Neurosci. 9, 1142–1149 (2006).
pubmed: 16921370 doi: 10.1038/nn1754
Fulco, C. P. et al. Systematic mapping of functional enhancer-promoter connections with CRISPR interference. Science 354, 769–773 (2016).
pubmed: 27708057 pmcid: 5438575 doi: 10.1126/science.aag2445
Mo, A. et al. Epigenomic signatures of neuronal diversity in the mammalian brain. Neuron 86, 1369–1384 (2015).
pubmed: 26087164 pmcid: 4499463 doi: 10.1016/j.neuron.2015.05.018
Luo, C. et al. Robust single-cell DNA methylome profiling with snmC-seq2. Nat. Commun. 9, 3824 (2018).
pubmed: 30237449 pmcid: 6147798 doi: 10.1038/s41467-018-06355-2
Buenrostro, J. D. et al. Single-cell chromatin accessibility reveals principles of regulatory variation. Nature 523, 486–490 (2015).
pubmed: 26083756 pmcid: 4685948 doi: 10.1038/nature14590
Cusanovich, D. A. et al. Epigenetics. Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing. Science 348, 910–914 (2015).
pubmed: 25953818 pmcid: 4836442 doi: 10.1126/science.aab1601
Bejerano, G. et al. Ultraconserved elements in the human genome. Science 304, 1321–1325 (2004).
pubmed: 15131266 doi: 10.1126/science.1098119
Dimitrieva, S. & Bucher, P. UCNEbase—a database of ultraconserved non-coding elements and genomic regulatory blocks. Nucleic Acids Res. 41(Database issue), D101–D109 (2013).
Andersson, R. et al. An atlas of active enhancers across human cell types and tissues. Nature 507, 455–461 (2014).
pubmed: 24670763 pmcid: 5215096 doi: 10.1038/nature12787
Dousse, A., Junier, T. & Zdobnov, E. M. CEGA—a catalog of conserved elements from genomic alignments. Nucleic Acids Res. 44, 96–100 (2016).
doi: 10.1093/nar/gkv1163
Dickel, D. E. et al. Ultraconserved enhancers are required for normal development. Cell 172, 491–499 (2018).
pubmed: 29358049 pmcid: 5786478 doi: 10.1016/j.cell.2017.12.017
Chan, K. Y. et al. Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems. Nat. Neurosci. 20, 1172–1179 (2017).
pubmed: 28671695 pmcid: 5529245 doi: 10.1038/nn.4593
Batista-Brito, R. et al. The cell-intrinsic requirement of Sox6 for cortical interneuron development. Neuron 63, 466–481 (2009).
pubmed: 19709629 pmcid: 2773208 doi: 10.1016/j.neuron.2009.08.005
Rossignol, E., Kruglikov, I., van den Maagdenberg, A. M., Rudy, B. & Fishell, G. CaV2.1 ablation in cortical interneurons selectively impairs fast-spiking basket cells and causes generalized seizures. Ann. Neurol. 74, 209–222 (2013).
pubmed: 23595603 pmcid: 3849346
Gandal, M. J., Nesbitt, A. M., McCurdy, R. M. & Alter, M. D. Measuring the maturity of the fast-spiking interneuron transcriptional program in autism, schizophrenia, and bipolar disorder. PLoS ONE 7, e41215 (2012).
pubmed: 22936973 pmcid: 3427326 doi: 10.1371/journal.pone.0041215
Barnes, S. A. et al. Disruption of mGluR5 in parvalbumin-positive interneurons induces core features of neurodevelopmental disorders. Mol. Psychiatry 20, 1161–1172 (2015).
pubmed: 26260494 pmcid: 4583365 doi: 10.1038/mp.2015.113
Tremblay, R., Lee, S. & Rudy, B. GABAergic interneurons in the neocortex: from cellular properties to circuits. Neuron 91, 260–292 (2016).
pubmed: 27477017 pmcid: 4980915 doi: 10.1016/j.neuron.2016.06.033
Daigle, T. L. A suite of transgenic driver and reporter mouse lines with enhanced brain-cell-type targeting and functionality. Cell 174, 465–480 (2018).
pubmed: 30007418 pmcid: 6086366 doi: 10.1016/j.cell.2018.06.035
Chen, T. W. et al. Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature 499, 295–300 (2013).
pubmed: 23868258 pmcid: 3777791 doi: 10.1038/nature12354
Magnus, C. J. et al. Ultrapotent chemogenetics for research and potential clinical applications. Science 364, eaav5282 (2019).
pubmed: 30872534 pmcid: 7252514 doi: 10.1126/science.aav5282
Armbruster, B. N., Li, X., Pausch, M. H., Herlitze, S. & Roth, B. L. Evolving the lock to fit the key to create a family of G protein-coupled receptors potently activated by an inert ligand. Proc. Natl Acad. Sci. USA 104, 5163–5168 (2007).
pubmed: 17360345 pmcid: 1829280 doi: 10.1073/pnas.0700293104
Yizhar, O. et al. Neocortical excitation/inhibition balance in information processing and social dysfunction. Nature 477, 171–178 (2011).
pubmed: 21796121 pmcid: 4155501 doi: 10.1038/nature10360
Eugène, E. et al. An organotypic brain slice preparation from adult patients with temporal lobe epilepsy. J. Neurosci. Methods 235, 234–244 (2014).
pubmed: 25064188 pmcid: 4426207 doi: 10.1016/j.jneumeth.2014.07.009
Gearing, L. J. et al. CiiiDER: a tool for predicting and analyzing transcription factor binding sites. PLoS ONE 14, e0215495 (2019).
pubmed: 31483836 pmcid: 6726224 doi: 10.1371/journal.pone.0215495
Fornes, O. et al. JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 48, D87–D92 (2020).
pubmed: 31701148 doi: 10.1093/nar/gkaa516
Hodge, R. D. et al. Conserved cell types with divergent features in human versus mouse cortex. Nature 573, 61–68 (2019).
pubmed: 31435019 pmcid: 6919571 doi: 10.1038/s41586-019-1506-7
Boldog, E. et al. Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type. Nat. Neurosci. 21, 1185–1195 (2018).
pubmed: 30150662 pmcid: 6130849 doi: 10.1038/s41593-018-0205-2
Feenstra, B. et al. Common variants associated with general and MMR vaccine-related febrile seizures. Nat. Genet. 46, 1274–1282 (2014).
pubmed: 25344690 pmcid: 4244308 doi: 10.1038/ng.3129
International League Against Epilepsy Consortium on Complex Epilepsies. Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies. Lancet Neurol. 13, 893–903 (2014).
doi: 10.1016/S1474-4422(14)70171-1
International League Against Epilepsy Consortium on Complex Epilepsies. Genome-wide megaanalysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies. Nat. Commun. 9, 5269 (2018).
doi: 10.1038/s41467-018-07524-z
GTEx Consortium. The genotype-tissue expression (GTEx) pilot analysis: multitissue gene regulation in humans. Science 348, 648–660 (2015).
pmcid: 4547484 doi: 10.1126/science.1262110
Walker, M. C. & Kullmann, D. M. Optogenetic and chemogenetic therapies for epilepsy. Neuropharmacology 168, 107751 (2019).
Fang, R. et al. Fast and accurate clustering of single cell epigenomes reveals cis-regulatory elements in rare cell types. Preprint at bioRxiv https://doi.org/10.1101/615179 (2019).
Tasic, B. et al. Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nat. Neurosci. 19, 335–346 (2016).
pubmed: 26727548 pmcid: 4985242 doi: 10.1038/nn.4216
Saunders, A. et al. Molecular diversity and specializations among the cells of the adult mouse brain. Cell 174, 1015–1030.e16 (2018).
pubmed: 30096299 pmcid: 6447408 doi: 10.1016/j.cell.2018.07.028

Auteurs

Douglas Vormstein-Schneider (D)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Jessica D Lin (JD)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Kenneth A Pelkey (KA)

National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA.

Ramesh Chittajallu (R)

National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA.

Baolin Guo (B)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Mario A Arias-Garcia (MA)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Kathryn Allaway (K)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.
NYU Langone Medical Center, New York University, New York, NY, USA.

Sofia Sakopoulos (S)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Gates Schneider (G)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Olivia Stevenson (O)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Josselyn Vergara (J)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Jitendra Sharma (J)

McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.

Qiangge Zhang (Q)

McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.

Tom P Franken (TP)

Systems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.

Jared Smith (J)

Systems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.

Leena A Ibrahim (LA)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Kevin J Mastro (KJ)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Ehsan Sabri (E)

Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY, USA.

Shuhan Huang (S)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Emilia Favuzzi (E)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Timothy Burbridge (T)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Qing Xu (Q)

Center for Genomics & Systems Biology, New York University, Abu Dhabi, UAE.

Lihua Guo (L)

Center for Genomics & Systems Biology, New York University, Abu Dhabi, UAE.

Ian Vogel (I)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Vanessa Sanchez (V)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Giuseppe A Saldi (GA)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Bram L Gorissen (BL)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Xiaoqing Yuan (X)

National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA.

Kareem A Zaghloul (KA)

National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA.

Orrin Devinsky (O)

Comprehensive Epilepsy Center, New York University School of Medicine, New York, NY, USA.

Bernardo L Sabatini (BL)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Renata Batista-Brito (R)

Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY, USA.

John Reynolds (J)

Systems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.

Guoping Feng (G)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA.

Zhanyan Fu (Z)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.

Chris J McBain (CJ)

National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA.

Gord Fishell (G)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Department of Neurobiology, Harvard Medical School, Boston, MA, USA.

Jordane Dimidschstein (J)

Stanley Center for Psychiatric Research, Broad Institute of Harvard and MIT, Cambridge, MA, USA. jordane@broadinstitute.org.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH