Avian Influenza Viruses Detected in Birds in Sub-Saharan Africa: A Systematic Review.
Orthomyxoviridae
avian influenza
avian influenza virus
ecology
epidemiology
poultry
sub-Saharan Africa
subtype
wild waterfowl
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
07 09 2020
07 09 2020
Historique:
received:
16
08
2020
revised:
03
09
2020
accepted:
05
09
2020
entrez:
10
9
2020
pubmed:
11
9
2020
medline:
10
3
2021
Statut:
epublish
Résumé
In the recent past, sub-Saharan Africa has not escaped the devastating effects of avian influenza virus (AIV) in poultry and wild birds. This systematic review describes the prevalence, spatiotemporal distribution, and virus subtypes detected in domestic and wild birds for the past two decades (2000-2019). We collected data from three electronic databases, PubMed, SpringerLink electronic journals and African Journals Online, using the Preferred Reporting Items for Systematic reviews and Meta-Analyses protocol. A total of 1656 articles were reviewed, from which 68 were selected. An overall prevalence of 3.0% AIV in birds was observed. The prevalence varied between regions and ranged from 1.1% to 7.1%. The Kruskal-Wallis and Wilcoxon signed-rank sum test showed no significant difference in the prevalence of AIV across regions, χ
Identifiants
pubmed: 32906666
pii: v12090993
doi: 10.3390/v12090993
pmc: PMC7552061
pii:
doi:
Types de publication
Journal Article
Meta-Analysis
Research Support, Non-U.S. Gov't
Systematic Review
Langues
eng
Sous-ensembles de citation
IM
Références
Avian Dis. 2008 Jun;52(2):269-77
pubmed: 18646456
Avian Dis. 2011 Dec;55(4):650-8
pubmed: 22312986
Vet Microbiol. 2014 Aug 27;172(3-4):548-54
pubmed: 25042528
Avian Dis. 2016 May;60(1 Suppl):286-95
pubmed: 27309069
Avian Dis. 2018 Dec;62(4):416-424
pubmed: 31119926
Arch Virol. 1994;135(1-2):101-14
pubmed: 8198436
Vaccine. 2007 Jul 26;25(30):5637-44
pubmed: 17126960
J Gen Virol. 2007 Aug;88(Pt 8):2297-306
pubmed: 17622635
J Gen Virol. 2011 May;92(Pt 5):1172-1183
pubmed: 21248176
Lancet. 1999 Sep 11;354(9182):916-7
pubmed: 10489954
Emerg Infect Dis. 2007 Mar;13(3):404-11
pubmed: 17552093
Emerg Infect Dis. 2019 Dec;25(12):2287-2289
pubmed: 31742528
Emerg Infect Dis. 2006 Jan;12(1):9-14
pubmed: 16494710
Influenza Other Respir Viruses. 2013 Mar;7(2):113-9
pubmed: 22515746
Avian Dis. 2010 Mar;54(1 Suppl):313-22
pubmed: 20521652
J Virol. 2015 Oct 21;90(1):444-56
pubmed: 26491155
Epidemiol Infect. 2014 May;142(5):896-920
pubmed: 24423384
BMC Vet Res. 2019 Dec 18;15(1):455
pubmed: 31852473
Vet Rec. 2006 Mar 4;158(9):309-10
pubmed: 16517825
Epidemiol Infect. 2015 Jul;143(10):2205-12
pubmed: 25530320
Avian Dis. 2000 Jul-Sep;44(3):655-60
pubmed: 11007015
Viruses. 2019 Feb 16;11(2):
pubmed: 30781528
Lancet Infect Dis. 2017 Aug;17(8):822-832
pubmed: 28583578
Vector Borne Zoonotic Dis. 2013 Jun;13(6):394-400
pubmed: 23621372
Clin Microbiol Rev. 2007 Apr;20(2):243-67
pubmed: 17428885
Arch Virol. 2017 Aug;162(8):2219-2230
pubmed: 28361288
Emerg Infect Dis. 2007 Apr;13(4):611-3
pubmed: 17553279
Emerg Infect Dis. 2016 Dec;22(12):2132-2136
pubmed: 27389972
Emerg Microbes Infect. 2020 Dec;9(1):616-627
pubmed: 32183621
Pathogens. 2019 Sep 25;8(4):
pubmed: 31557802
Avian Dis. 2010 Mar;54(1 Suppl):365-8
pubmed: 20521661
Rev Sci Tech. 2012 Dec;31(3):821-8
pubmed: 23520736
Dev Biol (Basel). 2006;124:189-99
pubmed: 16447511
Vet Microbiol. 2008 Aug 25;130(3-4):380-4
pubmed: 18387755
Zoonoses Public Health. 2009 Feb;56(1):10-5
pubmed: 18705655
Nat Med. 2001 Dec;7(12):1306-12
pubmed: 11726970
Emerg Infect Dis. 2008 Apr;14(4):637-40
pubmed: 18394282
Science. 2006 Apr 21;312(5772):384-8
pubmed: 16627734
Epidemiol Infect. 2009 Apr;137(4):456-63
pubmed: 18631423
Influenza Other Respir Viruses. 2012 Jul;6(4):240-4
pubmed: 22168475
Ann N Y Acad Sci. 2014 Sep;1323:115-39
pubmed: 24891213
PLoS Pathog. 2012;8(11):e1002998
pubmed: 23133386
Nucleic Acids Res. 2011 Sep 1;39(17):7775-90
pubmed: 21693560
Proc Biol Sci. 2012 Mar 22;279(1731):1131-41
pubmed: 21920984
Emerg Microbes Infect. 2012 Nov;1(11):e42
pubmed: 26038410
Proc Natl Acad Sci U S A. 1979 Oct;76(10):4908-12
pubmed: 291907
Influenza Other Respir Viruses. 2013 May;7(3):240-3
pubmed: 22747716
PLoS Pathog. 2008 Aug 15;4(8):e1000127
pubmed: 18704172
Virology. 1977 May 15;78(2):522-36
pubmed: 867816
Influenza Other Respir Viruses. 2009 Mar;3(2):63-8
pubmed: 19496843
One Health. 2016 Dec;2:55-64
pubmed: 27213177
J Virol. 2009 Aug;83(16):8021-31
pubmed: 19494001
Virology. 1976 Oct 15;74(2):489-503
pubmed: 982839
Rev Sci Tech. 2009 Apr;28(1):187-202
pubmed: 19618626
Emerg Infect Dis. 2008 Nov;14(11):1731-5
pubmed: 18976556
J Wildl Dis. 2020 Jan;56(1):214-218
pubmed: 31483707
Avian Dis. 2018 Oct 11;63(sp1):149-156
pubmed: 31131572
Prev Vet Med. 2012 Apr 1;104(1-2):114-24
pubmed: 22130311
Arch Virol. 2009;154(9):1517-22
pubmed: 19655084
J Virol. 2013 Mar;87(5):2455-62
pubmed: 23236060
Vet Ital. 2006 Apr-Jun;42(2):69-76
pubmed: 20429053
Emerg Infect Dis. 2017 Dec;23(12):2118-2119
pubmed: 28980894
Emerg Infect Dis. 2016 Mar;22(3):379-88
pubmed: 26886164
Virology. 1981 Jul 30;112(2):729-37
pubmed: 7257188
Prev Vet Med. 2014 Dec 1;117(3-4):590-600
pubmed: 25457135
Arch Virol. 2020 Jan;165(1):87-96
pubmed: 31707455
Cell Host Microbe. 2010 Jun 25;7(6):440-51
pubmed: 20542248
PLoS Pathog. 2013;9(10):e1003657
pubmed: 24130481
Mol Cell Proteomics. 2019 Dec;18(12):2348-2358
pubmed: 31604803
J Gen Virol. 2011 Jun;92(Pt 6):1416-1427
pubmed: 21367986
Vet World. 2017 Oct;10(10):1194-1204
pubmed: 29184365
Virol J. 2016 Aug 15;13(1):140
pubmed: 27527708
Virus Genes. 1998;17(2):179-83
pubmed: 9857991
Infect Dis Poverty. 2014 Nov 03;3(1):38
pubmed: 25671118
Science. 2012 Jul 13;337(6091):199-204
pubmed: 22745253
Sci Rep. 2019 Sep 23;9(1):13681
pubmed: 31548582
Emerg Infect Dis. 2007 Apr;13(4):626-9
pubmed: 17553284
Influenza Res Treat. 2015;2015:787890
pubmed: 26664747
BMC Vet Res. 2014 Feb 27;10:50
pubmed: 24576325
Anim Health Res Rev. 2007 Jun;8(1):1-21
pubmed: 17692139
J Virol. 2020 May 18;94(11):
pubmed: 32188732
Acta Trop. 2016 Dec;164:321-328
pubmed: 27603430
Arch Virol. 2000;145(5):885-93
pubmed: 10881676
Science. 2013 Jul 26;341(6144):410-4
pubmed: 23868922
Microbiol Rev. 1992 Mar;56(1):152-79
pubmed: 1579108
Virology. 1978 Nov;91(1):60-78
pubmed: 726267
Microb Pathog. 2019 Oct;135:103613
pubmed: 31254602
Clin Exp Vaccine Res. 2017 Jul;6(2):95-103
pubmed: 28775973
PLoS One. 2018 Jul 3;13(7):e0199260
pubmed: 29969454
Vet Med Int. 2019 Jan 27;2019:3796369
pubmed: 30834103
Virology. 2008 Oct 25;380(2):243-54
pubmed: 18774155
Ecohealth. 2017 Dec;14(4):805-809
pubmed: 29098490
Afr J Infect Dis. 2016 Nov 24;11(1):44-49
pubmed: 28337492
Proc Natl Acad Sci U S A. 1980 Apr;77(4):1857-61
pubmed: 6246509
Emerg Infect Dis. 2018 Jul;24(7):1367-1370
pubmed: 29912710
Infect Genet Evol. 2018 Dec;66:269-271
pubmed: 30342095
Infect Genet Evol. 2020 Mar;78:104074
pubmed: 31634645
Avian Dis. 2012 Dec;56(4 Suppl):865-79
pubmed: 23402106
mBio. 2017 Feb 14;8(1):
pubmed: 28196963
Emerg Infect Dis. 2018 Jul;24(7):1371-1374
pubmed: 29912707
Infect Ecol Epidemiol. 2019 Feb 20;9(1):1575687
pubmed: 30815236
Avian Dis. 2012 Dec;56(4 Suppl):966-8
pubmed: 23402120
Ecohealth. 2011 Mar;8(1):109-15
pubmed: 21125309
Avian Pathol. 2018 Dec;47(6):559-575
pubmed: 29985640
Ecohealth. 2011 Mar;8(1):4-13
pubmed: 21516374
Vector Borne Zoonotic Dis. 2004 Fall;4(3):177-89
pubmed: 15631061
Trop Anim Health Prod. 2010 Jun;42(5):807-9
pubmed: 19911294
Transbound Emerg Dis. 2017 Oct;64(5):1465-1478
pubmed: 27311569
Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4269-74
pubmed: 22371588
Avian Pathol. 2013;42(3):206-14
pubmed: 23607480
Avian Dis. 2007 Mar;51(1 Suppl):279-84
pubmed: 17494567
Zoonoses Public Health. 2015 Mar;62(2):131-40
pubmed: 24803167
Vet Ital. 2012 Jul-Sep;48(3):309-12
pubmed: 23038077
Vet Sci. 2018 Aug 06;5(3):
pubmed: 30082582
Avian Pathol. 2019 Oct;48(5):470-476
pubmed: 31142135
Int J Surg. 2010;8(5):336-41
pubmed: 20171303