Advancing Free-Energy Calculations of Metalloenzymes in Drug Discovery via Implementation of LFMM Potentials.
Journal
Journal of chemical theory and computation
ISSN: 1549-9626
Titre abrégé: J Chem Theory Comput
Pays: United States
ID NLM: 101232704
Informations de publication
Date de publication:
10 Nov 2020
10 Nov 2020
Historique:
pubmed:
11
9
2020
medline:
15
5
2021
entrez:
10
9
2020
Statut:
ppublish
Résumé
To address some of the inherent challenges in modeling metalloenzymes, we here report an extension to the functional form of the OPLS3e force field to include terms adopted from the ligand field molecular mechanics (LFMM) model, including the angular overlap and Morse potential terms. The integration of these terms with OPLS3e, herein referred to as OPLS3e+M, improves the description of metal-ligand interactions and provides accurate relative binding energies and geometric preferences of transition-metal complexes by training to gas-phase density functional theory (DFT) energies. For [Cu(H
Identifiants
pubmed: 32910652
doi: 10.1021/acs.jctc.0c00615
doi:
Substances chimiques
Ligands
0
Metalloproteins
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM