Advancing Free-Energy Calculations of Metalloenzymes in Drug Discovery via Implementation of LFMM Potentials.


Journal

Journal of chemical theory and computation
ISSN: 1549-9626
Titre abrégé: J Chem Theory Comput
Pays: United States
ID NLM: 101232704

Informations de publication

Date de publication:
10 Nov 2020
Historique:
pubmed: 11 9 2020
medline: 15 5 2021
entrez: 10 9 2020
Statut: ppublish

Résumé

To address some of the inherent challenges in modeling metalloenzymes, we here report an extension to the functional form of the OPLS3e force field to include terms adopted from the ligand field molecular mechanics (LFMM) model, including the angular overlap and Morse potential terms. The integration of these terms with OPLS3e, herein referred to as OPLS3e+M, improves the description of metal-ligand interactions and provides accurate relative binding energies and geometric preferences of transition-metal complexes by training to gas-phase density functional theory (DFT) energies. For [Cu(H

Identifiants

pubmed: 32910652
doi: 10.1021/acs.jctc.0c00615
doi:

Substances chimiques

Ligands 0
Metalloproteins 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

6926-6937

Auteurs

Steven Dajnowicz (S)

Schrodinger, Inc., 120 West 45th Street, New York, New York 10036, United States.

Delaram Ghoreishi (D)

Schrodinger, Inc., 120 West 45th Street, New York, New York 10036, United States.

Kalyan Modugula (K)

D.E. Shaw India Private Ltd., Plot No. 573, Jubilee Hills, Hyderabad, Telangana 500096, India.

Wolfgang Damm (W)

Schrodinger, Inc., 120 West 45th Street, New York, New York 10036, United States.

Edward D Harder (ED)

Schrodinger, Inc., 120 West 45th Street, New York, New York 10036, United States.

Robert Abel (R)

Schrodinger, Inc., 120 West 45th Street, New York, New York 10036, United States.

Lingle Wang (L)

Schrodinger, Inc., 120 West 45th Street, New York, New York 10036, United States.

Haoyu S Yu (HS)

Schrodinger, Inc., 120 West 45th Street, New York, New York 10036, United States.

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Classifications MeSH