Molecular epidemiology of mumps viruses in the Netherlands, 2017-2019.
Journal
PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081
Informations de publication
Date de publication:
2020
2020
Historique:
received:
28
04
2020
accepted:
31
08
2020
entrez:
14
9
2020
pubmed:
15
9
2020
medline:
28
10
2020
Statut:
epublish
Résumé
Mumps cases continue to occur, also in countries with a relatively high vaccination rate. The last major outbreaks of mumps in the Netherlands were in 2009-2012 and thereafter, only small clusters and single cases were reported. Molecular epidemiology can provide insights in the circulation of mumps viruses. The aims of the present study were to analyze the molecular epidemiology of mumps viruses in the Netherlands in 2017-2019 and to compare the phylogenetic trees built from sequence data of near complete mumps virus genomes or from the SH gene and non-coding regions (SH+NCRs). To this end, Sanger sequence data from SH+NCRs were analyzed from 82 mumps genotype G viruses. In addition, near complete genomes were obtained from 10 mumps virus isolates using next-generation sequencing. Analysis of SH+NCRs sequences of mumps genotype G viruses revealed the presence of two major genetic lineages in the Netherlands, which was confirmed by analysis of near complete genomes. Comparison of phylogenetic trees built with SH+NCRs or near complete genomes indicated that the topology was similar, while somewhat longer branches were present in the phylogenetic tree with near complete genomes. These results confirm that analysis of SH + NCRs sequence data is a useful approach for molecular surveillance. Furthermore, data from recent mumps genotype G viruses might indicate (intermittent) circulation of mumps genotype G viruses in the Netherlands in 2017-2019.
Identifiants
pubmed: 32925979
doi: 10.1371/journal.pone.0233143
pii: PONE-D-20-12309
pmc: PMC7489541
doi:
Substances chimiques
Viral Proteins
0
small hydrophobic protein, Mumps virus
133424-89-2
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0233143Déclaration de conflit d'intérêts
The authors have declared that no competing interests exist.
Références
Arch Virol. 2005 Sep;150(9):1903-9
pubmed: 15959834
Virus Evol. 2018 Jan 08;4(1):vex042
pubmed: 29340210
BMC Infect Dis. 2019 Nov 9;19(1):954
pubmed: 31706275
J Clin Microbiol. 2016 Apr;54(4):919-27
pubmed: 26763966
Hum Vaccin Immunother. 2015;11(6):1413-7
pubmed: 25874726
Emerg Infect Dis. 2014 Apr;20(4):643-8
pubmed: 24655811
Bioinformatics. 2018 Dec 1;34(23):4121-4123
pubmed: 29790939
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
Wkly Epidemiol Rec. 2012 Jun 1;87(22):217-24
pubmed: 24340404
Vaccine. 2011 Nov 15;29(49):9271-5
pubmed: 21983156
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Rev Med Virol. 2015 Mar;25(2):85-101
pubmed: 25424978
Bioinformatics. 2008 Aug 15;24(16):1757-64
pubmed: 18567917
Infect Genet Evol. 2016 Nov;45:145-150
pubmed: 27590714
PLoS Biol. 2020 Feb 11;18(2):e3000611
pubmed: 32045407
Infect Genet Evol. 2019 Nov;75:103965
pubmed: 31319177
J Med Virol. 2005 Mar;75(3):470-4
pubmed: 15648065
Nucleic Acids Res. 2016 Jul 8;44(W1):W232-5
pubmed: 27084950
Sci Rep. 2019 Aug 30;9(1):12615
pubmed: 31471545
Infect Genet Evol. 2019 Apr;69:230-234
pubmed: 30738791
Ned Tijdschr Geneeskd. 1993 Jul 24;137(30):1498-500
pubmed: 8366936
Euro Surveill. 2018 Apr;23(15):
pubmed: 29667574
Nat Methods. 2017 Jun;14(6):587-589
pubmed: 28481363
Mol Biol Evol. 2016 Jul;33(7):1870-4
pubmed: 27004904
Am J Epidemiol. 1995 Aug 1;142(3):233-53; discussion 231-2
pubmed: 7631629
Mol Biol Evol. 2013 May;30(5):1188-95
pubmed: 23418397