Machine learning-based radiomic, clinical and semantic feature analysis for predicting overall survival and MGMT promoter methylation status in patients with glioblastoma.
Adult
Aged
Brain Neoplasms
/ diagnostic imaging
DNA Methylation
DNA Modification Methylases
/ genetics
DNA Repair Enzymes
/ genetics
Female
Glioblastoma
/ diagnostic imaging
Humans
Image Processing, Computer-Assisted
/ methods
Machine Learning
Magnetic Resonance Imaging
Male
Middle Aged
Promoter Regions, Genetic
/ genetics
Retrospective Studies
Semantics
Survival Analysis
Tumor Suppressor Proteins
/ genetics
Glioblastoma
Machine learning
Radiomics
Survival
VASARI
Journal
Magnetic resonance imaging
ISSN: 1873-5894
Titre abrégé: Magn Reson Imaging
Pays: Netherlands
ID NLM: 8214883
Informations de publication
Date de publication:
12 2020
12 2020
Historique:
received:
15
05
2020
revised:
27
08
2020
accepted:
08
09
2020
pubmed:
28
9
2020
medline:
25
2
2021
entrez:
27
9
2020
Statut:
ppublish
Résumé
Survival varies in patients with glioblastoma due to intratumoral heterogeneity and radiomics/imaging biomarkers have potential to demonstrate heterogeneity. The objective was to combine radiomic, semantic and clinical features to improve prediction of overall survival (OS) and O A retrospective study of 181 MRI studies (mean age 58 ± 13 years, mean OS 497 ± 354 days) performed in patients with histopathology-proven glioblastoma. Tumour mass, contrast-enhancement and necrosis were segmented from volumetric contrast-enhanced T1-weighted imaging (CE-T1WI). 333 radiomic features were extracted and 16 Visually Accessible Rembrandt Images (VASARI) features were evaluated by two experienced neuroradiologists. Top radiomic, VASARI and clinical features were used to build machine learning models to predict MGMT status, and all features including MGMT status were used to build Cox proportional hazards regression (Cox) and random survival forest (RSF) models for OS prediction. The optimal cut-off value for MGMT promoter methylation index was 12.75%; 42 radiomic features exhibited significant differences between high and low-methylation groups. However, model performance accuracy combining radiomic, VASARI and clinical features for MGMT status prediction varied between 45 and 67%. For OS predication, the RSF model based on clinical, VASARI and CE radiomic features achieved the best performance with an average iAUC of 96.2 ± 1.7 and C-index of 90.0 ± 0.3. VASARI features in combination with clinical and radiomic features from the enhancing tumour show promise for predicting OS with a high accuracy in patients with glioblastoma from pre-operative volumetric CE-T1WI.
Identifiants
pubmed: 32980505
pii: S0730-725X(20)30301-5
doi: 10.1016/j.mri.2020.09.017
pii:
doi:
Substances chimiques
Tumor Suppressor Proteins
0
DNA Modification Methylases
EC 2.1.1.-
MGMT protein, human
EC 2.1.1.63
DNA Repair Enzymes
EC 6.5.1.-
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
161-170Informations de copyright
Copyright © 2020 Elsevier Inc. All rights reserved.