Development of an ObLiGaRe Doxycycline Inducible Cas9 system for pre-clinical cancer drug discovery.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
29 09 2020
Historique:
received: 23 03 2020
accepted: 26 08 2020
entrez: 30 9 2020
pubmed: 1 10 2020
medline: 21 10 2020
Statut: epublish

Résumé

The CRISPR-Cas9 system has increased the speed and precision of genetic editing in cells and animals. However, model generation for drug development is still expensive and time-consuming, demanding more target flexibility and faster turnaround times with high reproducibility. The generation of a tightly controlled ObLiGaRe doxycycline inducible SpCas9 (ODInCas9) transgene and its use in targeted ObLiGaRe results in functional integration into both human and mouse cells culminating in the generation of the ODInCas9 mouse. Genomic editing can be performed in cells of various tissue origins without any detectable gene editing in the absence of doxycycline. Somatic in vivo editing can model non-small cell lung cancer (NSCLC) adenocarcinomas, enabling treatment studies to validate the efficacy of candidate drugs. The ODInCas9 mouse allows robust and tunable genome editing granting flexibility, speed and uniformity at less cost, leading to high throughput and practical preclinical in vivo therapeutic testing.

Identifiants

pubmed: 32994412
doi: 10.1038/s41467-020-18548-9
pii: 10.1038/s41467-020-18548-9
pmc: PMC7525522
doi:

Substances chimiques

Antineoplastic Agents 0
RNA, Guide 0
CRISPR-Associated Protein 9 EC 3.1.-
Cas9 endonuclease Streptococcus pyogenes EC 3.1.-
Doxycycline N12000U13O

Types de publication

Evaluation Study Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

4903

Références

Lee, J. G., Sung, Y. H. & Baek, I. J. Generation of genetically-engineered animals using engineered endonucleases. Arch. Pharm. Res. 41, 885–897 (2018).
pubmed: 29777358 pmcid: 6153862 doi: 10.1007/s12272-018-1037-z
Li, H. et al. In vivo genome editing restores haemostasis in a mouse model of haemophilia. Nature 475, 217–221 (2011).
pubmed: 21706032 pmcid: 3152293 doi: 10.1038/nature10177
Maresca, M., Lin, V. G., Guo, N. & Yang, Y. Obligate ligation-gated recombination (ObLiGaRe): custom-designed nuclease-mediated targeted integration through nonhomologous end joining. Genome Res. 23, 539–546 (2013).
pubmed: 23152450 pmcid: 3589542 doi: 10.1101/gr.145441.112
Wijshake, T., Baker, D. J. & van de Sluis, B. Endonucleases: new tools to edit the mouse genome. Biochim. Biophys. Acta 1842, 1942–1950 (2014).
pubmed: 24794718 doi: 10.1016/j.bbadis.2014.04.020 pmcid: 24794718
Adli, M. The CRISPR tool kit for genome editing and beyond. Nat. Commun. 9, 1911 (2018).
Kersten, K., de Visser, K. E., van Miltenburg, M. H. & Jonkers, J. Genetically engineered mouse models in oncology research and cancer medicine. EMBO Mol. Med. 9, 137–153 (2017).
pubmed: 28028012 doi: 10.15252/emmm.201606857 pmcid: 28028012
Winslow, M. M. et al. Suppression of lung adenocarcinoma progression by Nkx2-1. Nature 473, 101–104 (2011).
pubmed: 21471965 pmcid: 3088778 doi: 10.1038/nature09881
Lampreht Tratar, U., Horvat, S. & Cemazar, M. Transgenic mouse models in cancer research. Front. Oncol. 8, 268 (2018).
pubmed: 30079312 pmcid: 6062593 doi: 10.3389/fonc.2018.00268
Weber, J. et al. CRISPR/Cas9 somatic multiplex-mutagenesis for high-throughput functional cancer genomics in mice. Proc. Natl Acad. Sci. U. S. A. 112, 13982–13987 (2015).
pubmed: 26508638 pmcid: 4653208 doi: 10.1073/pnas.1512392112
Heyer, J., Kwong, L. N., Lowe, S. W. & Chin, L. Non-germline genetically engineered mouse models for translational cancer research. Nat. Rev. Cancer 10, 470–480 (2010).
pubmed: 20574449 pmcid: 4602412 doi: 10.1038/nrc2877
Huijbers, I. J., Krimpenfort, P., Berns, A. & Jonkers, J. Rapid validation of cancer genes in chimeras derived from established genetically engineered mouse models. Bioessays 33, 701–710 (2011).
pubmed: 21735458 pmcid: 3179600 doi: 10.1002/bies.201100018
DuPage, M., Dooley, A. L. & Jacks, T. Conditional mouse lung cancer models using adenoviral or lentiviral delivery of Cre recombinase. Nat. Protoc. 4, 1064–1072 (2009).
pubmed: 19561589 pmcid: 2757265 doi: 10.1038/nprot.2009.95
Platt, R. J. et al. CRISPR-Cas9 knockin mice for genome editing and cancer modeling. Cell 159, 440–455 (2014).
pubmed: 25263330 pmcid: 4265475 doi: 10.1016/j.cell.2014.09.014
Zetsche, B., Volz, S. E. & Zhang, F. A split-Cas9 architecture for inducible genome editing and transcription modulation. Nat. Biotechnol. 33, 139–142 (2015).
pubmed: 25643054 doi: 10.1038/nbt.3149 pmcid: 25643054
Enache, O. M. et al. Author correction: Cas9 activates the p53 pathway and selects for p53-inactivating mutations. Nat. Genet. https://doi.org/10.1038/s41588-020-0663-9 (2020).
Chiou, S. H. et al. Pancreatic cancer modeling using retrograde viral vector delivery and in vivo CRISPR/Cas9-mediated somatic genome editing. Genes Dev. 29, 1576–1585 (2015).
pubmed: 26178787 pmcid: 4526740 doi: 10.1101/gad.264861.115
Chu, V. T. et al. Efficient generation of Rosa26 knock-in mice using CRISPR/Cas9 in C57BL/6 zygotes. BMC Biotechnol. 16, 4 (2016).
pubmed: 26772810 pmcid: 4715285 doi: 10.1186/s12896-016-0234-4
Jo, N. et al. Platforms of in vivo genome editing with inducible Cas9 for advanced cancer modeling. Cancer Sci. 110, 926–938 (2019).
pubmed: 30588718 pmcid: 6398895 doi: 10.1111/cas.13924
Katigbak, A., Robert, F., Paquet, M. & Pelletier, J. Inducible genome editing with conditional CRISPR/Cas9 mice. G3 8, 1627–1635 (2018).
pubmed: 29519936 doi: 10.1534/g3.117.300327 pmcid: 29519936
Yang, H. et al. One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering. Cell 154, 1370–1379 (2013).
pubmed: 23992847 pmcid: 3961003 doi: 10.1016/j.cell.2013.08.022
Dow, L. E. et al. Inducible in vivo genome editing with CRISPR-Cas9. Nat. Biotechnol. 33, 390–394 (2015).
pubmed: 25690852 pmcid: 4390466 doi: 10.1038/nbt.3155
Loonstra, A. et al. Growth inhibition and DNA damage induced by Cre recombinase in mammalian cells. Proc. Natl Acad. Sci. U. S. A. 98, 9209–9214 (2001).
pubmed: 11481484 pmcid: 55399 doi: 10.1073/pnas.161269798
Sun, Y., Chen, X. & Xiao, D. Tetracycline-inducible expression systems: new strategies and practices in the transgenic mouse modeling. Acta Biochim Biophys. Sin. 39, 235–246 (2007).
pubmed: 17417678 doi: 10.1111/j.1745-7270.2007.00258.x pmcid: 17417678
Giel-Moloney, M., Krause, D. S., Chen, G., Van Etten, R. A. & Leiter, A. B. Ubiquitous and uniform in vivo fluorescence in ROSA26-EGFP BAC transgenic mice. Genesis 45, 83–89 (2007).
pubmed: 17269129 pmcid: 2121618 doi: 10.1002/dvg.20269
Carreras, A. et al. In vivo genome and base editing of a human PCSK9 knock-in hypercholesterolemic mouse model. BMC Biol. 17, 4 (2019).
pubmed: 30646909 pmcid: 6334452 doi: 10.1186/s12915-018-0624-2
Ji H. et al. LKB1 modulates lung cancer differentiation and metastasis. Nature 448, 807–810 (2007).
pubmed: 17676035 doi: 10.1038/nature06030 pmcid: 17676035
Tchaicha, J. H. et al. Kinase domain activation of FGFR2 yields high-grade lung adenocarcinoma sensitive to a Pan-FGFR inhibitor in a mouse model of NSCLC. Cancer Res. 74, 4676–4684 (2014).
pubmed: 25035393 pmcid: 4154986 doi: 10.1158/0008-5472.CAN-13-3218
Baker, A. M. et al. Robust RNA-based in situ mutation detection delineates colorectal cancer subclonal evolution. Nat. Commun. 8, 1998 (2017).
pubmed: 29222441 pmcid: 5722928 doi: 10.1038/s41467-017-02295-5
Janne, P. A. et al. Selumetinib plus docetaxel compared with docetaxel alone and progression-free survival in patients with KRAS-mutant advanced non-small cell lung cancer: the SELECT-1 Randomized Clinical Trial. JAMA 317, 1844–1853 (2017).
pubmed: 28492898 pmcid: 5815037 doi: 10.1001/jama.2017.3438
Chen, Z. et al. A murine lung cancer co-clinical trial identifies genetic modifiers of therapeutic response. Nature 483, 613–617 (2012).
pubmed: 22425996 pmcid: 3385933 doi: 10.1038/nature10937
Charlesworth C. T. et al. Identification of preexisting adaptive immunity to Cas9 proteins in humans. Nat. Med. 25, 249–254 (2019).
pubmed: 30692695 pmcid: 7199589 doi: 10.1038/s41591-018-0326-x
Song, H. K. & Hwang, D. Y. Use of C57BL/6N mice on the variety of immunological researches. Lab Anim. Res. 33, 119–123 (2017).
pubmed: 28747977 pmcid: 5527137 doi: 10.5625/lar.2017.33.2.119
Pawlowski, M. et al. Inducible and deterministic forward programming of human pluripotent stem cells into neurons, skeletal myocytes, and oligodendrocytes. Stem Cell Rep. 8, 803–812 (2017).
doi: 10.1016/j.stemcr.2017.02.016
Randolph, L. N., Bao, X., Zhou, C. & Lian, X. An all-in-one, Tet-On 3G inducible PiggyBac system for human pluripotent stem cells and derivatives. Sci. Rep. 7, 1549 (2017).
pubmed: 28484230 pmcid: 5431539 doi: 10.1038/s41598-017-01684-6
Noiman, T. & Kahana, C. A simple combined use of CRISPR-Cas9 and Cre-LoxP technologies for generating conditional gene knockouts in mammalian cells. CRISPR J. 1, 278–285 (2018).
pubmed: 31021220 doi: 10.1089/crispr.2018.0010 pmcid: 31021220
Wang, H. et al. One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 153, 910–918 (2013).
pubmed: 23643243 pmcid: 3969854 doi: 10.1016/j.cell.2013.04.025
Semprini, S. et al. Cryptic loxP sites in mammalian genomes: genome-wide distribution and relevance for the efficiency of BAC/PAC recombineering techniques. Nucleic Acids Res. 35, 1402–1410 (2007).
pubmed: 17284462 pmcid: 1865043 doi: 10.1093/nar/gkl1108
Schonig, K. & Bujard, H. Generating conditional mouse mutants via tetracycline-controlled gene expression. Methods Mol. Biol. 209, 69–104 (2003).
pubmed: 12357963 pmcid: 12357963
Wang, X. W. et al. A microRNA-inducible CRISPR-Cas9 platform serves as a microRNA sensor and cell-type-specific genome regulation tool. Nat. Cell Biol. 21, 522–530 (2019).
pubmed: 30804503 doi: 10.1038/s41556-019-0292-7 pmcid: 30804503
Winters, I. P. et al. Multiplexed in vivo homology-directed repair and tumor barcODIng enables parallel quantification of Kras variant oncogenicity. Nat. Commun. 8, 2053 (2017).
pubmed: 29233960 pmcid: 5727199 doi: 10.1038/s41467-017-01519-y
Sutherland, K. D. et al. Multiple cells-of-origin of mutant K-Ras-induced mouse lung adenocarcinoma. Proc. Natl Acad. Sci. U. S. A. 111, 4952–4957 (2014).
pubmed: 24586047 pmcid: 3977239 doi: 10.1073/pnas.1319963111
Xu, X. et al. Evidence for type II cells as cells of origin of K-Ras-induced distal lung adenocarcinoma. Proc. Natl Acad. Sci. U. S. A. 109, 4910–4915 (2012).
pubmed: 22411819 pmcid: 3323959 doi: 10.1073/pnas.1112499109
Lichtenstein, A. V. Genetic mosaicism and cancer: cause and effect. Cancer Res. 78, 1375–1378 (2018).
pubmed: 29472519 doi: 10.1158/0008-5472.CAN-17-2769 pmcid: 29472519
Haapaniemi, E., Botla, S., Persson, J., Schmierer, B. & Taipale, J. CRISPR-Cas9 genome editing induces a p53-mediated DNA damage response. Nat. Med. 24, 927–930 (2018).
pubmed: 29892067 doi: 10.1038/s41591-018-0049-z pmcid: 29892067
Sjogren, A. K. et al. Critical differences in toxicity mechanisms in induced pluripotent stem cell-derived hepatocytes, hepatic cell lines and primary hepatocytes. Arch. Toxicol. 88, 1427–1437 (2014).
pubmed: 24912781 doi: 10.1007/s00204-014-1265-z pmcid: 24912781
Patro, R., Duggal, G., Love, M. I., Irizarry, R. A. & Kingsford, C. Salmon provides fast and bias-aware quantification of transcript expression. Nat. Methods 14, 417–419 (2017).
pubmed: 28263959 pmcid: 5600148 doi: 10.1038/nmeth.4197
Soneson, C. L., M., I. & Robinson, M. D. Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences. F1000Research 4, 1521 (2016).
pmcid: 4712774 doi: 10.12688/f1000research.7563.2
Ran, F. A. et al. Genome engineering using the CRISPR-Cas9 system. Nat. Protoc. 8, 2281–2308 (2013).
pubmed: 24157548 pmcid: 3969860 doi: 10.1038/nprot.2013.143
Taheri-Ghahfarokhi, A. et al. Decoding non-random mutational signatures at Cas9 targeted sites. Nucleic Acids Res. 46, 8417–8434 (2018).
pubmed: 30032200 pmcid: 6144780 doi: 10.1093/nar/gky653
Akcakaya, P. et al. In vivo CRISPR editing with no detectable genome-wide off-target mutations. Nature 561, 416–419 (2018).
pubmed: 30209390 pmcid: 6194229 doi: 10.1038/s41586-018-0500-9
Pinello, L. et al. Analyzing CRISPR genome-editing experiments with CRISPResso. Nat. Biotechnol. 34, 695–697 (2016).
pubmed: 27404874 pmcid: 5242601 doi: 10.1038/nbt.3583
Leung, A. K., Tam, Y. Y., Chen, S., Hafez, I. M. & Cullis, P. R. Microfluidic Mixing: a general method for encapsulating macromolecules in lipid nanoparticle systems. J. Phys. Chem. B 119, 8698–8706 (2015).
pubmed: 26087393 doi: 10.1021/acs.jpcb.5b02891 pmcid: 26087393
Yanez Arteta, M. et al. Successful reprogramming of cellular protein production through mRNA delivered by functionalized lipid nanoparticles. Proc. Natl Acad. Sci. U. S. A. 115, E3351–E3360 (2018).
pubmed: 29588418 pmcid: 5899464 doi: 10.1073/pnas.1720542115
ThermoFisher. Normalization in western blotting to obtain relative quantitation https://assets.thermofisher.com/TFS-Assets/BID/Technical-Notes/ibright-normalization-western-blotting-relative-quantitation-technical-note.pdf (2019).

Auteurs

Anders Lundin (A)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Michelle J Porritt (MJ)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Himjyot Jaiswal (H)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Cellink AB, Gothenburg, Sweden.

Frank Seeliger (F)

Clinical Pharmacology and Safety Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Camilla Johansson (C)

Clinical Pharmacology and Safety Sciences, Sweden Imaging Hub, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Abdel Wahad Bidar (AW)

Clinical Pharmacology and Safety Sciences, Sweden Imaging Hub, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Lukas Badertscher (L)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Sandra Wimberger (S)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Emma J Davies (EJ)

Early Oncology TDE, Oncology R&D, AstraZeneca, Li KaShing Centre, Cambridge, UK.
Healx, Cambridge, UK.

Elizabeth Hardaker (E)

Early Oncology TDE, Oncology R&D, AstraZeneca, Li KaShing Centre, Cambridge, UK.

Carla P Martins (CP)

Early Oncology TDE, Oncology R&D, AstraZeneca, Li KaShing Centre, Cambridge, UK.

Emily James (E)

Early Oncology TDE, Oncology R&D, AstraZeneca, Li KaShing Centre, Cambridge, UK.

Therese Admyre (T)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Amir Taheri-Ghahfarokhi (A)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Jenna Bradley (J)

Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge Science Park, Cambridge, UK.

Anna Schantz (A)

Pharmaceutical Sciences, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Babak Alaeimahabadi (B)

Data Sciences and Quantitative Biology, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Maryam Clausen (M)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Xiufeng Xu (X)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Lorenz M Mayr (LM)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Roberto Nitsch (R)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Mohammad Bohlooly-Y (M)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.

Simon T Barry (ST)

Early Oncology TDE, Oncology R&D, AstraZeneca, Li KaShing Centre, Cambridge, UK.

Marcello Maresca (M)

Translational Genomics, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden. Marcello.Maresca@astrazeneca.com.

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