Common genetic variation in humans impacts

SARS-CoV-2 brain, neurons, FURIN rs4702 host genetics human induced pluripotent stem cell

Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
21 Sep 2020
Historique:
pubmed: 1 10 2020
medline: 1 10 2020
entrez: 30 9 2020
Statut: epublish

Résumé

The host response to SARS-CoV-2, the etiologic agent of the COVID-19 pandemic, demonstrates significant inter-individual variability. In addition to showing more disease in males, the elderly, and individuals with underlying comorbidities, SARS-CoV-2 can seemingly render healthy individuals with profound clinical complications. We hypothesize that, in addition to viral load and host antibody repertoire, host genetic variants also impact vulnerability to infection. Here we apply human induced pluripotent stem cell (hiPSC)-based models and CRISPR-engineering to explore the host genetics of SARS-CoV-2. We demonstrate that a single nucleotide polymorphism (rs4702), common in the population at large, and located in the 3'UTR of the protease FURIN, impacts alveolar and neuron infection by SARS-CoV-2

Identifiants

pubmed: 32995783
doi: 10.1101/2020.09.20.300574
pmc: PMC7523109
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIDA NIH HHS
ID : U01 DA048279
Pays : United States

Commentaires et corrections

Type : UpdateIn

Déclaration de conflit d'intérêts

CONFLICT OF INTEREST STATEMENT The authors declare no conflicts of interest.

Références

Clin Infect Dis. 2021 Jul 15;73(2):328-331
pubmed: 32750119
Adv Exp Med Biol. 2014;807:75-96
pubmed: 24619619
Nat Med. 2020 Jul;26(7):1077-1083
pubmed: 32405028
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Emerg Infect Dis. 2020 Jul;26(7):1478-1488
pubmed: 32267220
Nat Genet. 2021 Jun;53(6):801-808
pubmed: 33888907
Nature. 2020 Jul;583(7816):459-468
pubmed: 32353859
Annu Rev Genet. 2017 Nov 27;51:241-263
pubmed: 28853921
Sci Rep. 2020 Dec 8;10(1):21415
pubmed: 33293627
Science. 2020 Mar 13;367(6483):1260-1263
pubmed: 32075877
EMBO J. 2020 Oct 15;39(20):e106230
pubmed: 32876341
J Med Virol. 2020 Jun;92(6):552-555
pubmed: 32104915
J Neurosci Methods. 2020 Feb 14;334:108548
pubmed: 32065989
Methods. 2016 May 15;101:113-24
pubmed: 26626326
Sci Rep. 2021 Jan 11;11(1):413
pubmed: 33432067
Nature. 2012 Mar 25;484(7395):519-23
pubmed: 22446628
Nature. 2019 Oct;574(7776):112-116
pubmed: 31554966
Nat Med. 2020 Oct;26(10):1609-1615
pubmed: 32747830
Ann Neurol. 2020 Aug;88(2):423-427
pubmed: 32418288
Acta Paediatr. 2020 Jun;109(6):1088-1095
pubmed: 32202343
N Engl J Med. 2020 Apr 30;382(18):1708-1720
pubmed: 32109013
Complex Psychiatry. 2021 Feb;6(3-4):68-82
pubmed: 34883504
Database (Oxford). 2019 Jan 1;2019:
pubmed: 30951143
Genome Biol. 2021 Mar 5;22(1):76
pubmed: 33673841
Nat Med. 2003 May;9(5):548-53
pubmed: 12692541
Cell. 2016 Dec 15;167(7):1853-1866.e17
pubmed: 27984732
Nat Genet. 2019 Oct;51(10):1475-1485
pubmed: 31548722
Nat Genet. 2021 Mar;53(3):304-312
pubmed: 33664506
Clin Infect Dis. 2020 Jul 28;71(15):762-768
pubmed: 32161940
Cell. 2020 Apr 16;181(2):281-292.e6
pubmed: 32155444
Nature. 2020 May;581(7809):434-443
pubmed: 32461654
Cell Stem Cell. 2017 Sep 7;21(3):305-318.e8
pubmed: 28803920
Cell Stem Cell. 2020 Dec 3;27(6):962-973.e7
pubmed: 32979316
J Exp Med. 2021 Mar 1;218(3):
pubmed: 33433624
Neuron. 2013 Jun 5;78(5):785-98
pubmed: 23764284
Nat Commun. 2020 Nov 13;11(1):5761
pubmed: 33188185
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
Nature. 2020 May;581(7809):465-469
pubmed: 32235945
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5871-6
pubmed: 19321428
Science. 2020 May 8;368(6491):630-633
pubmed: 32245784
Sci Rep. 2018 Oct 17;8(1):15312
pubmed: 30333510
Nat Commun. 2020 Feb 10;11(1):810
pubmed: 32041960
J Med Virol. 2018 May;90(5):854-860
pubmed: 29315655
Cell Stem Cell. 2020 Dec 3;27(6):937-950.e9
pubmed: 33010822
Schizophr Res. 2018 Sep;199:176-180
pubmed: 29499969
J Neurol. 2021 Feb;268(2):392-402
pubmed: 32691236
Nature. 2017 Oct 11;550(7675):204-213
pubmed: 29022597
CMAJ. 2004 Nov 23;171(11):1349-52
pubmed: 15557587
Nat Neurosci. 2016 Nov;19(11):1442-1453
pubmed: 27668389
Proc Natl Acad Sci U S A. 2020 Jul 14;117(28):16587-16595
pubmed: 32571934
JAMA. 2020 Aug 18;324(7):663-673
pubmed: 32706371
Science. 2015 Apr 24;348(6233):448-53
pubmed: 25814066
Genome Med. 2020 Oct 27;12(1):93
pubmed: 33109261
Cell Rep. 2020 Sep 22;32(12):108185
pubmed: 32941788
N Engl J Med. 2020 Jun 4;382(23):2268-2270
pubmed: 32294339
Bioinformatics. 2017 Jul 01;33(13):2050-2052
pubmed: 28203714
Nat Protoc. 2019 Dec;14(12):3303-3332
pubmed: 31732721
Antiviral Res. 2020 Apr;176:104742
pubmed: 32057769
Nat Methods. 2019 May;16(5):409-412
pubmed: 31011186
Eur J Hum Genet. 2020 Jun;28(6):715-718
pubmed: 32404885
Nat Commun. 2017 Dec 20;8(1):2225
pubmed: 29263384
N Engl J Med. 2020 Jun 25;382(26):2574-2576
pubmed: 32302082
Cell. 2019 Jan 10;176(1-2):377-390.e19
pubmed: 30612741
JAMA Pediatr. 2015 Nov;169(11):1040-5
pubmed: 26389824
Cell Stem Cell. 2020 Jul 2;27(1):125-136.e7
pubmed: 32579880
Science. 2020 Mar 27;367(6485):1444-1448
pubmed: 32132184
Signal Transduct Target Ther. 2020 Dec 4;5(1):283
pubmed: 33277466
Hepatol Commun. 2017 Oct 12;1(10):1058-1069
pubmed: 29404442
Nat Commun. 2020 Mar 27;11(1):1620
pubmed: 32221306
Lancet Neurol. 2020 May;19(5):383-384
pubmed: 32246917
Cell. 2020 May 28;181(5):1036-1045.e9
pubmed: 32416070
Stem Cell Reports. 2018 Mar 13;10(3):780-793
pubmed: 29429958
Nat Commun. 2020 Jul 30;11(1):3810
pubmed: 32733001
J Biol Chem. 2002 Aug 16;277(33):29455-9
pubmed: 12023287
Nature. 1996 Aug 22;382(6593):722-5
pubmed: 8751444
Nucleic Acids Res. 2020 Jan 8;48(D1):D77-D83
pubmed: 31665515
Cell. 2020 Apr 16;181(2):271-280.e8
pubmed: 32142651
Science. 2020 Jul 3;369(6499):50-54
pubmed: 32358202
Eur Geriatr Med. 2020 Oct;11(5):857-862
pubmed: 32666303
Nat Methods. 2017 Jun;14(6):621-628
pubmed: 28504679
Nucleic Acids Res. 2014 Jan;42(Database issue):D975-9
pubmed: 24297256
Science. 2020 Sep 4;369(6508):1249-1255
pubmed: 32680882
Curr Protoc Stem Cell Biol. 2018 May;45(1):e51
pubmed: 30040246

Auteurs

Kristina Dobrindt (K)

Pamela Sklar Division of Psychiatric Genomics, Department of Genetics and Genomics, Icahn Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Daisy A Hoagland (DA)

Department of Microbiology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029, USA.
Graduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Carina Seah (C)

Black Family Stem Cell Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Graduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Bibi Kassim (B)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Callan P O'Shea (CP)

Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Marina Iskhakova (M)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Michael B Fernando (MB)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Graduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

P J Michael Deans (PJM)

Pamela Sklar Division of Psychiatric Genomics, Department of Genetics and Genomics, Icahn Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Samuel K Powell (SK)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Graduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Ben Javidfar (B)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Aleta Murphy (A)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Graduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Cyril Peter (C)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Rasmus Møeller (R)

Department of Microbiology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029, USA.
Graduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Meilin Fernandez Garcia (MF)

Pamela Sklar Division of Psychiatric Genomics, Department of Genetics and Genomics, Icahn Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Masaki Kimura (M)

Division of Gastroenterology, Hepatology and Nutrition; Division of Developmental Biology, Cincinnati Children's Hospital Medical Center; Center for Stem Cell and Organoid Medicine (CuSTOM); Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, United States; Institute of Research, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.

Kentaro Iwasawa (K)

Division of Gastroenterology, Hepatology and Nutrition; Division of Developmental Biology, Cincinnati Children's Hospital Medical Center; Center for Stem Cell and Organoid Medicine (CuSTOM); Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, United States; Institute of Research, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.

John Crary (J)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Darrell N Kotton (DN)

Center for Regenerative Medicine of Boston University and Boston Medical Center, Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA.

Takanori Takebe (T)

Division of Gastroenterology, Hepatology and Nutrition; Division of Developmental Biology, Cincinnati Children's Hospital Medical Center; Center for Stem Cell and Organoid Medicine (CuSTOM); Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, United States; Institute of Research, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.

Laura M Huckins (LM)

Pamela Sklar Division of Psychiatric Genomics, Department of Genetics and Genomics, Icahn Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Mental Illness Research, Education and Clinical Centers, James J. Peters Department of Veterans Affairs Medical Center, Bronx, NY 10468, USA.

Benjamin R tenOever (BR)

Department of Microbiology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029, USA.

Schahram Akbarian (S)

Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Kristen J Brennand (KJ)

Pamela Sklar Division of Psychiatric Genomics, Department of Genetics and Genomics, Icahn Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Nash Family Department of Neuroscience, Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Black Family Stem Cell Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029.
Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029.

Classifications MeSH