Frequency and molecular characteristics of PALB2-associated cancers in Russian patients.


Journal

International journal of cancer
ISSN: 1097-0215
Titre abrégé: Int J Cancer
Pays: United States
ID NLM: 0042124

Informations de publication

Date de publication:
01 01 2021
Historique:
received: 15 06 2020
revised: 15 09 2020
accepted: 18 09 2020
pubmed: 1 10 2020
medline: 11 6 2021
entrez: 30 9 2020
Statut: ppublish

Résumé

PALB2 is а high-penetrance gene for hereditary breast cancer (BC). Our study aimed to investigate the spectrum of PALB2 mutations in Russian cancer patients. PALB2 sequencing revealed pathogenic variants in 3/190 (1.6%) young-onset and/or familial and/or bilateral BC cases but none in 96 ovarian cancer (OC) or 172 pancreatic cancer patients. Subsequently, seven recurrent PALB2 pathogenic alleles were selected from this and previous Slavic studies and tested in an extended patient series. PALB2 pathogenic variants were detected in 5/585 (0.9%) "high-risk" BC, 10/1508 (0.7%) consecutive BC and 5/1802 (0.3%) OC cases. Haplotyping suggested that subjects with Slavic alleles c.509-510delGA (n = 10) and c.172-175delTTGT (n = 4) as well as carriers of Finnish c.1592delT mutation (n = 4) originated from a single founder each, while PALB2 p.R414X allele (n = 4) had at least two independent founders. Somatic loss of heterozygosity (LOH) was revealed in 5/10 chemonaive BCs and in 0/2 BC samples obtained after neoadjuvant therapy. Multigene sequencing identified somatic PALB2 inactivating point mutation in one out of two tumors without PALB2 LOH but in none of four BCs with PALB2 LOH. Genomic instability, as determined by NGS, was observed in four out of five tumors with biallelic PALB2 inactivation but not in the BC sample with the preserved wild-type PALB2 allele. PALB2 germ-line mutations contribute to a small fraction of cancer cases in Russia. The majority although not all PALB2-driven BCs have somatic inactivation of the remaining PALB2 allele and therefore potential sensitivity to platinum compounds and PARP inhibitors.

Identifiants

pubmed: 32997802
doi: 10.1002/ijc.33317
doi:

Substances chimiques

Fanconi Anemia Complementation Group N Protein 0
PALB2 protein, human 0
Poly(ADP-ribose) Polymerase Inhibitors 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

203-210

Informations de copyright

© 2020 Union for International Cancer Control.

Références

Xia B, Sheng Q, Nakanishi K, et al. Control of BRCA2 cellular and clinical functions by a nuclear partner, PALB2. Mol Cell. 2006;22:719-729.
Ducy M, Sesma-Sanz L, Guitton-Sert L, et al. The tumor suppressor PALB2: inside out. Trends Biochem Sci. 2019;44:226-240.
Xia B, Dorsman JC, Ameziane N, et al. Fanconi anemia is associated with a defect in the BRCA2 partner PALB2. Nat Genet. 2007;39:159-161.
Reid S, Schindler D, Hanenberg H, et al. Biallelic mutations in PALB2 cause Fanconi anemia subtype FA-N and predispose to childhood cancer. Nat Genet. 2007;39:162-164.
Rahman N, Seal S, Thompson D, et al. PALB2, which encodes a BRCA2-interacting protein, is a breast cancer susceptibility gene. Nat Genet. 2007;39:165-167.
Jones S, Hruban RH, Kamiyama M, et al. Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene. Science. 2009;324:217.
Pritchard CC, Mateo J, Walsh MF, et al. Inherited DNA-repair gene mutations in men with metastatic prostate cancer. N Engl J Med. 2016;375:443-453.
Kotsopoulos J, Sopik V, Rosen B, et al. Frequency of germline PALB2 mutations among women with epithelial ovarian cancer. Fam Cancer. 2017;16:29-34.
Fewings E, Larionov A, Redman J, et al. Germline pathogenic variants in PALB2 and other cancer-predisposing genes in families with hereditary diffuse gastric cancer without CDH1 mutation: a whole-exome sequencing study. Lancet Gastroenterol Hepatol. 2018;3:489-498.
AlDubayan SH, Giannakis M, Moore ND, et al. Inherited DNA-repair defects in colorectal cancer. Am J Hum Genet. 2018;102:401-414.
Yang X, Leslie G, Doroszuk A, et al. Cancer risks associated with Germline PALB2 pathogenic variants: an international study of 524 families. J Clin Oncol. 2020;38:674-685.
Antoniou AC, Casadei S, Heikkinen T, et al. Breast-cancer risk in families with mutations in PALB2. N Engl J Med. 2014;371:497-506.
Southey MC, Winship I, Nguyen-Dumont T. PALB2: research reaching to clinical outcomes for women with breast cancer. Hered Cancer Clin Pract. 2016;14:9.
Kurian AW, Ward KC, Howlader N, et al. Genetic testing and results in a population-based cohort of breast cancer patients and ovarian cancer patients. J Clin Oncol. 2019;37:1305-1315.
Zhou J, Wang H, Fu F, et al. Spectrum of PALB2 germline mutations and characteristics of PALB2-related breast cancer: screening of 16,501 unselected patients with breast cancer and 5890 controls by next-generation sequencing. Cancer. 2020;126:3202-3208.
Erkko H, Xia B, Nikkilä J, et al. A recurrent mutation in PALB2 in Finnish cancer families. Nature. 2007;446:316-319.
Tischkowitz M, Xia B, Sabbaghian N, et al. Analysis of PALB2/FANCN-associated breast cancer families. Proc Natl Acad Sci USA. 2007;104:6788-6793.
Lee JEA, Li N, Rowley SM, et al. Molecular analysis of PALB2-associated breast cancers. J Pathol. 2018;245:53-60.
Li A, Geyer FC, Blecua P, et al. Homologous recombination DNA repair defects in PALB2-associated breast cancers. NPJ Breast Cancer. 2019;5:23.
Iyevleva AG, Imyanitov EN. Cytotoxic and targeted therapy for hereditary cancers. Hered Cancer Clin Pract. 2016;14:17.
Manahan ER, Kuerer HM, Sebastian M, et al. Consensus guidelines on genetic testing for hereditary breast cancer from the American society of breast surgeons. Ann Surg Oncol. 2019;26:3025-3031.
Yanus GA, Akhapkina TA, Whitehead AJ, et al. Exome-based search for recurrent disease-causing alleles in Russian population. Eur J Med Genet. 2019;62:103656.
Sokolenko AP, Rozanov ME, Mitiushkina NV, et al. Founder mutations in early-onset, familial and bilateral breast cancer patients from Russia. Fam Cancer. 2007;6:281-286.
Sokolenko AP, Iyevleva AG, Preobrazhenskaya EV, et al. High prevalence and breast cancer predisposing role of the BLM c.1642 C>T (Q548X) mutation in Russia. Int J Cancer. 2012;130:2867-2873.
Müllenbach R, Lagoda PJ, Welter C. An efficient salt-chloroform extraction of DNA from blood and tissues. Trends Genet. 1989;5(12):391.
Bogdanova N, Sokolenko AP, Iyevleva AG, et al. PALB2 mutations in German and Russian patients with bilateral breast cancer. Breast Cancer Res Treat. 2011;126:545-550.
Sokolenko AP, Preobrazhenskaya EV, Aleksakhina SN, et al. Candidate gene analysis of BRCA1/2 mutation-negative high-risk Russian breast cancer patients. Cancer Lett. 2015;359:259-261.
Van der Auwera GA, Carneiro M, Hartl C, et al. From FastQ data to high-confidence variant calls: the genome analysis toolkit best practices pipeline. Curr Protoc Bioinformatics. 2013;43:11.10.1-11.10.33.
Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J. A general framework for estimating the relative pathogenicity of human genetic variants. Nat Genet. 2014;46:310-315.
Golden Helix GenomeBrowse visualization tool [software]. Version 2.x. Bozeman, MT: Golden Helix, Inc; 2020. http://www.goldenhelix.com
Sokolenko AP, Bizin IV, Preobrazhenskaya EV, et al. Molecular profiles of BRCA1-associated ovarian cancer treated by platinum-based therapy: analysis of primary, residual and relapsed tumors. Int J Cancer. 2020;146:1879-1888.
Sokolenko AP, Rozanov ME, Mitiushkina NV, et al. Founder mutations in early-onset, familial and bilateral breast cancer patients from Russia. Fam Cancer. 2007;6:281-286.
Gorodnova TV, Sokolenko AP, Ivantsov AO, et al. High response rates to neoadjuvant platinum-based therapy in ovarian cancer patients carrying germ-line BRCA mutation. Cancer Lett. 2015;369:363-367.
Shindo K, Yu J, Suenaga M, et al. Deleterious germline mutations in patients with apparently sporadic pancreatic adenocarcinoma. J Clin Oncol. 2017;35(30):3382-3390.
Chaffee KG, Oberg AL, McWilliams RR, et al. Prevalence of germ-line mutations in cancer genes among pancreatic cancer patients with a positive family history. Genet Med. 2018;20(1):119-127.
Goldstein JB, Zhao L, Wang X, et al. Germline DNA sequencing reveals novel mutations predictive of overall survival in a cohort of patients with pancreatic cancer. Clin Cancer Res. 2020;26(6):1385-1394.
Lowery MA, Wong W, Jordan EJ, et al. Prospective evaluation of germline alterations in patients with exocrine pancreatic neoplasms. J Natl Cancer Inst. 2018;110(10):1067-1074.
Janssen B, Bellis S, Koller T, Tischkowitz M, Liau SS. A systematic review of predicted pathogenic PALB2 variants: an analysis of mutational overlap between epithelial cancers. J Hum Genet. 2020;65:199-205.
Song H, Dicks EM, Tyrer J, et al. Population-based targeted sequencing of 54 candidate genes identifies PALB2 as a susceptibility gene for high-grade serous ovarian cancer. J Med Genet. 2020;0:1-9. https://doi.org/10.1136/jmedgenet-2019-106739.
Zhou J, Wang H, Fu F, et al. Spectrum of PALB2 germline mutations and characteristics of PALB2-related breast cancer: screening of 16,501 unselected patients with breast cancer and 5890 controls by next-generation sequencing. Cancer. 2020;126(14):3202-3208.
Kluska A, Balabas A, Piatkowska M, et al. PALB2 mutations in BRCA1/2-mutation negative breast and ovarian cancer patients from Poland. BMC Med Genomics. 2017 Mar 9;10(1):14.
Cybulski C, Kluźniak W, Huzarski T, et al. Clinical outcomes in women with breast cancer and a PALB2 mutation: a prospective cohort analysis. Lancet Oncol. 2015;16:638-644.
Janatova M, Kleibl Z, Stribrna J, et al. The PALB2 gene is a strong candidate for clinical testing in BRCA1- and BRCA2-negative hereditary breast cancer. Cancer Epidemiol Biomarkers Prev. 2013;22:2323-2332.
Slater EP, Langer P, Niemczyk E, et al. PALB2 mutations in European familial pancreatic cancer families. Clin Genet. 2010;78:490-494.
Desai DC, Lockman JC, Chadwick RB, et al. Recurrent germline mutation in MSH2 arises frequently de novo. J Med Genet. 2000;37:646-652.
Sokolenko AP, Savonevich EL, Ivantsov AO, et al. Rapid selection of BRCA1-proficient tumor cells during neoadjuvant therapy for ovarian cancer in BRCA1 mutation carriers. Cancer Lett. 2017;397:127-132.
Mavaddat N, Barrowdale D, Andrulis IL, et al. Consortium of investigators of modifiers of BRCA1/2. Pathology of breast and ovarian cancers among BRCA1 and BRCA2 mutation carriers: results from the consortium of investigators of modifiers of BRCA1/2 (CIMBA). Cancer Epidemiol Biomarkers Prev. 2012;21:134-147.

Auteurs

Elena V Preobrazhenskaya (EV)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.
St. Petersburg Pediatric Medical University, St. Petersburg, Russia.
Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical and Chemical Medicine, Moscow, Russia.

Alla U Shleykina (AU)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.

Olga A Gorustovich (OA)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.

Alexandr S Martianov (AS)

St. Petersburg Pediatric Medical University, St. Petersburg, Russia.

Ilya V Bizin (IV)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.

Elena I Anisimova (EI)

St. Petersburg Regional Cancer Hospital, St. Petersburg, Russia.

Tatjana N Sokolova (TN)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.
Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical and Chemical Medicine, Moscow, Russia.

Svetlana A Chuinyshena (SA)

St. Petersburg Pediatric Medical University, St. Petersburg, Russia.

Ekatherina Sh Kuligina (ES)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.
St. Petersburg Pediatric Medical University, St. Petersburg, Russia.

Alexandr V Togo (AV)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.
St. Petersburg Pediatric Medical University, St. Petersburg, Russia.
Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical and Chemical Medicine, Moscow, Russia.

Alexey M Belyaev (AM)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.
I.I. Mechnikov North-Western Medical University, St. Petersburg, Russia.

Alexandr O Ivantsov (AO)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.
St. Petersburg Pediatric Medical University, St. Petersburg, Russia.

Anna P Sokolenko (AP)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.
St. Petersburg Pediatric Medical University, St. Petersburg, Russia.

Evgeny N Imyanitov (EN)

N.N. Petrov Institute of Oncology, St. Petersburg, Russia.
St. Petersburg Pediatric Medical University, St. Petersburg, Russia.
I.I. Mechnikov North-Western Medical University, St. Petersburg, Russia.

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