Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
20 10 2020
20 10 2020
Historique:
received:
17
04
2020
accepted:
25
09
2020
entrez:
21
10
2020
pubmed:
22
10
2020
medline:
25
11
2020
Statut:
epublish
Résumé
Non-model bacteria like Pseudomonas putida, Lactococcus lactis and other species have unique and versatile metabolisms, offering unique opportunities for Synthetic Biology (SynBio). However, key genome editing and recombineering tools require optimization and large-scale multiplexing to unlock the full SynBio potential of these bacteria. In addition, the limited availability of a set of characterized, species-specific biological parts hampers the construction of reliable genetic circuitry. Mining of currently available, diverse bacteriophages could complete the SynBio toolbox, as they constitute an unexplored treasure trove for fully adapted metabolic modulators and orthogonally-functioning parts, driven by the longstanding co-evolution between phage and host.
Identifiants
pubmed: 33082347
doi: 10.1038/s41467-020-19124-x
pii: 10.1038/s41467-020-19124-x
pmc: PMC7576135
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
5294Références
ACS Synth Biol. 2019 Aug 16;8(8):1901-1912
pubmed: 31298831
Microb Cell Fact. 2015 Sep 21;14:150
pubmed: 26392346
J Mol Biol. 1993 Oct 5;233(3):414-28
pubmed: 8411153
ISME J. 2016 Aug;10(8):1823-35
pubmed: 26882266
Appl Environ Microbiol. 2017 Aug 17;83(17):
pubmed: 28646112
Microb Cell Fact. 2019 Jan 31;18(1):22
pubmed: 30704485
Sci Rep. 2016 Jan 22;6:19452
pubmed: 26797514
Microb Biotechnol. 2011 Jan;4(1):98-105
pubmed: 21255377
J Mol Biol. 1976 Mar 5;101(3):427-33
pubmed: 815553
Microb Cell Fact. 2017 Jan 3;16(1):1
pubmed: 28049473
Nat Biotechnol. 2019 Jul;37(7):730-743
pubmed: 31209374
PLoS One. 2015 Jul 24;10(7):e0133248
pubmed: 26207762
Appl Environ Microbiol. 2005 Feb;71(2):883-92
pubmed: 15691944
Methods Enzymol. 2015;550:251-65
pubmed: 25605389
Mol Microbiol. 2011 Mar;79(5):1325-38
pubmed: 21205014
Sci Rep. 2017 Nov 8;7(1):15058
pubmed: 29118374
J Virol. 2012 Sep;86(18):10103-11
pubmed: 22787217
Nucleic Acids Res. 2017 Feb 28;45(4):2196-2209
pubmed: 28053117
Biotechnol Appl Biochem. 2016 Sep;63(5):734-739
pubmed: 26234465
Front Bioeng Biotechnol. 2020 Jan 24;7:458
pubmed: 32039175
Nucleic Acids Res. 2017 May 19;45(9):5437-5448
pubmed: 28158713
Nat Microbiol. 2020 Jan;5(1):48-55
pubmed: 31819217
Microb Biotechnol. 2019 Jan;12(1):98-124
pubmed: 29926529
Biotechnol Adv. 2018 Jan - Feb;36(1):150-167
pubmed: 29056473
Appl Microbiol Biotechnol. 2015 Jun;99(12):5151-62
pubmed: 25750031
J Ind Microbiol Biotechnol. 2018 Jul;45(7):517-527
pubmed: 29299733
Environ Microbiol. 2011 Oct;13(10):2702-16
pubmed: 21883790
Trends Biotechnol. 2020 Mar;38(3):316-333
pubmed: 31679824
Curr Opin Microbiol. 2008 Dec;11(6):567-73
pubmed: 18983935
FEMS Microbiol Lett. 2016 Feb;363(4):
pubmed: 26802072
Nat Commun. 2014 Jul 21;5:4459
pubmed: 25041899
mBio. 2018 Dec 11;9(6):
pubmed: 30538179
ACS Synth Biol. 2017 Jun 16;6(6):943-949
pubmed: 28320206
Biochem J. 2016 Aug 1;473(15):2383-93
pubmed: 27247423
Curr Opin Biotechnol. 2006 Feb;17(1):34-42
pubmed: 16359854
Tuberculosis (Edinb). 2008 Nov;88(6):566-75
pubmed: 18768372
Metab Eng. 2018 Nov;50:142-155
pubmed: 29758287
Metab Eng Commun. 2017 Apr 15;5:1-8
pubmed: 29188179
Mol Syst Biol. 2020 May;16(5):e9208
pubmed: 32449593
Gene. 1994 Oct 11;148(1):71-4
pubmed: 7926841
Appl Microbiol Biotechnol. 2010 Feb;85(6):1923-33
pubmed: 19789867
ACS Synth Biol. 2016 Aug 19;5(8):795-809
pubmed: 26999422
Cell. 2012 Jun 22;149(7):1488-99
pubmed: 22726436
Genome Res. 2017 Feb;27(2):289-299
pubmed: 27965289
mBio. 2014 Jul 01;5(4):e01379-14
pubmed: 24987094
Methods Mol Biol. 2013;985:223-46
pubmed: 23417807
J Inorg Biochem. 2016 Jul;160:106-13
pubmed: 26765998
Mol Microbiol. 2012 Feb;83(4):669-81
pubmed: 22403819
Arch Virol. 2020 May;165(5):1253-1260
pubmed: 32162068
Sci Rep. 2017 Jun 29;7(1):4373
pubmed: 28663596
Chem Biol. 2012 Mar 23;19(3):361-71
pubmed: 22444591
Trends Biotechnol. 2019 May;37(5):548-562
pubmed: 30446263
Sci Rep. 2017 Aug 17;7(1):8645
pubmed: 28819202
Sci Rep. 2018 Jan 17;8(1):1009
pubmed: 29343791
J Bacteriol. 2006 Sep;188(17):6101-14
pubmed: 16923877
Nat Commun. 2020 Mar 5;11(1):1203
pubmed: 32139702
Microb Biotechnol. 2017 Jul;10(4):702-718
pubmed: 28276630
Mol Syst Biol. 2014 Jul 30;10:742
pubmed: 25080493
Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4838-43
pubmed: 24639514
ACS Synth Biol. 2020 Jan 17;9(1):104-114
pubmed: 31794196
FEBS J. 2019 Oct;286(19):3757-3774
pubmed: 31419030
Nat Commun. 2017 Jan 27;8:14246
pubmed: 28128207
Biotechnol Biofuels. 2019 Sep 27;12:197
pubmed: 31572493
Nat Rev Microbiol. 2019 Nov;17(11):651-664
pubmed: 31485032
Appl Microbiol Biotechnol. 2010 Jun;87(2):679-90
pubmed: 20449741
Microb Biotechnol. 2019 Sep;12(5):1003-1013
pubmed: 31237428
Metab Eng Commun. 2020 Mar 19;10:e00126
pubmed: 32215253
Elife. 2016 Jul 22;5:
pubmed: 27447594
Nat Commun. 2019 Sep 6;10(1):4063
pubmed: 31492858
Nat Biotechnol. 2014 Dec;32(12):1276-81
pubmed: 25402616
Microb Biotechnol. 2011 Jul;4(4):533-47
pubmed: 21418544
Microb Biotechnol. 2017 Jan;10(1):138-150
pubmed: 27804278
J Biol Chem. 2019 May 10;294(19):7537-7545
pubmed: 30936208
Crit Rev Biotechnol. 2018 Aug;38(5):647-656
pubmed: 28954542
Appl Microbiol Biotechnol. 2012 Feb;93(3):1065-74
pubmed: 21975693
FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S220-S243
pubmed: 28830093
Biomolecules. 2015 Apr 27;5(2):647-67
pubmed: 25924224
Virology. 2003 Jul 5;311(2):305-15
pubmed: 12842620
Environ Microbiol. 2020 Jun 14;:
pubmed: 32537803
Metab Eng. 2016 Jan;33:109-118
pubmed: 26620533
Nucleic Acids Res. 2011 Jun;39(11):4890-9
pubmed: 21325266
Plasmid. 2020 May;109:102503
pubmed: 32209400
Appl Environ Microbiol. 2006 Jan;72(1):869-79
pubmed: 16391129
Front Microbiol. 2017 Jul 31;8:1441
pubmed: 28824573
Curr Microbiol. 2009 Sep;59(3):274-81
pubmed: 19484297
BMC Syst Biol. 2011 Nov 11;5:191
pubmed: 22078029
J Ind Microbiol Biotechnol. 2018 Feb;45(2):103-109
pubmed: 29288437
PLoS One. 2008;3(11):e3647
pubmed: 18985154
Nat Methods. 2020 May;17(5):471-479
pubmed: 32203383
J Microbiol Methods. 2006 Mar;64(3):391-7
pubmed: 15987659
BMC Biotechnol. 2007 Mar 21;7:15
pubmed: 17374174
ACS Synth Biol. 2018 May 18;7(5):1424-1435
pubmed: 29609457
J Proteome Res. 2014 Oct 3;13(10):4446-56
pubmed: 25185497
Nat Microbiol. 2017 Feb 06;2:16274
pubmed: 28165460
Nat Microbiol. 2019 Feb;4(2):244-250
pubmed: 30617347
FEMS Microbiol Lett. 2003 Jul 15;224(1):139-42
pubmed: 12855181
Synth Syst Biotechnol. 2017 Oct 04;2(3):176-191
pubmed: 29318198
ACS Synth Biol. 2019 Apr 19;8(4):647-654
pubmed: 30943009
AMB Express. 2019 Sep 25;9(1):154
pubmed: 31555921
Nat Methods. 2013 Apr;10(4):354-60
pubmed: 23474465
ACS Synth Biol. 2016 Sep 16;5(9):1028-32
pubmed: 27230689
Microb Biotechnol. 2020 Jan;13(1):233-249
pubmed: 30861315
J Bacteriol. 1985 Nov;164(2):918-21
pubmed: 2997137
J Bacteriol. 1996 Sep;178(17):5100-4
pubmed: 8752325
ACS Synth Biol. 2017 Jul 21;6(7):1359-1369
pubmed: 28355056
Microb Biotechnol. 2020 Jan;13(1):210-221
pubmed: 30793496
Proc Natl Acad Sci U S A. 2020 Jun 16;117(24):13689-13698
pubmed: 32467157
Int J Biol Macromol. 2020 Aug 15;157:544-552
pubmed: 32344079
Nucleic Acids Res. 2016 Sep 6;44(15):7495-508
pubmed: 27402159
Nucleic Acids Res. 2012 May;40(10):e76
pubmed: 22328729
Science. 2016 Apr 1;352(6281):aac7341
pubmed: 27034378
Nucleic Acids Res. 2020 Jan 8;48(D1):D1164-D1170
pubmed: 31740968
RNA Biol. 2012 Dec;9(12):1491-7
pubmed: 23059907
Environ Microbiol. 2013 Jan;15(1):271-86
pubmed: 23171249
ACS Synth Biol. 2018 Oct 19;7(10):2423-2435
pubmed: 30138558
J Bacteriol. 1998 Feb;180(4):921-31
pubmed: 9473048
Nucleic Acids Res. 2013 Jan;41(Database issue):D666-75
pubmed: 23180763
Plasmid. 2005 Nov;54(3):278-82
pubmed: 15941587
FEMS Microbiol Lett. 2015 Aug;362(16):
pubmed: 26156144
Virus Res. 2017 Jul 15;239:136-142
pubmed: 28192164
Microb Biotechnol. 2020 Jan;13(1):222-232
pubmed: 30864281
Biotechnol J. 2019 Jan;14(1):e1800483
pubmed: 30417965
Nucleic Acids Res. 2011 Mar;39(6):2210-20
pubmed: 21075796
Nat Commun. 2019 Dec 18;10(1):5774
pubmed: 31852903
Metab Eng. 2016 May;35:46-54
pubmed: 26802977
Metab Eng. 2013 Jan;15:98-112
pubmed: 23149123
Biochem Soc Trans. 2016 Jun 15;44(3):731-7
pubmed: 27284035
Annu Rev Virol. 2018 Sep 29;5(1):453-476
pubmed: 30001182
Appl Environ Microbiol. 2011 Aug;77(15):5549-52
pubmed: 21666018
Microb Cell Fact. 2014 Nov 11;13:159
pubmed: 25384394
N Biotechnol. 2014 Dec 25;31(6):562-71
pubmed: 24572656
Nat Commun. 2019 Jul 15;10(1):3099
pubmed: 31308373
Chem Rev. 2016 Oct 26;116(20):12655-12687
pubmed: 27319741
ACS Synth Biol. 2018 Nov 16;7(11):2686-2697
pubmed: 30346720
Nat Biotechnol. 2009 Oct;27(10):946-50
pubmed: 19801975
ACS Synth Biol. 2016 Jul 15;5(7):741-53
pubmed: 27092814
Microb Cell Fact. 2011 Feb 21;10:11
pubmed: 21338491
J Bacteriol. 1996 Feb;178(4):1197-9
pubmed: 8576057
FEMS Microbiol Lett. 2014 Feb;351(2):170-8
pubmed: 24303789
Cell Microbiol. 2014 Dec;16(12):1822-35
pubmed: 25059764
Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11503-8
pubmed: 25049409
Nature. 2009 Aug 13;460(7257):894-898
pubmed: 19633652
ACS Synth Biol. 2015 Dec 18;4(12):1341-51
pubmed: 26133359
Trends Biotechnol. 2019 Jan;37(1):100-115
pubmed: 30318171
Nat Struct Mol Biol. 2019 Apr;26(4):308-314
pubmed: 30936526
Curr Opin Biotechnol. 2019 Oct;59:1-7
pubmed: 30784872
PLoS Comput Biol. 2005 Aug;1(3):e25
pubmed: 16110342
Protein Sci. 2015 Jan;24(1):1-10
pubmed: 25303009
Microb Biotechnol. 2020 Mar;13(2):368-385
pubmed: 32045111
Nucleic Acids Res. 2017 Jun 20;45(11):e94
pubmed: 28334760
Protein Expr Purif. 2012 Oct;85(2):218-23
pubmed: 22951189
Annu Rev Biochem. 2017 Jun 20;86:515-539
pubmed: 28375743
ACS Synth Biol. 2020 Jun 19;9(6):1336-1348
pubmed: 32324989
iScience. 2020 Mar 27;23(3):100946
pubmed: 32179472
Biotechnol J. 2018 May;13(5):e1700161
pubmed: 29058367
Nat Rev Microbiol. 2017 Sep;15(9):517-530
pubmed: 28649138
Nat Commun. 2018 Jul 23;9(1):2881
pubmed: 30038362
Mol Microbiol. 2008 Mar;67(5):1094-107
pubmed: 18221264
Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):E5726-E5735
pubmed: 29871954
Microb Cell Fact. 2015 Feb 21;14:23
pubmed: 25890048