Ensembl 2021.
Journal
Nucleic acids research
ISSN: 1362-4962
Titre abrégé: Nucleic Acids Res
Pays: England
ID NLM: 0411011
Informations de publication
Date de publication:
08 01 2021
08 01 2021
Historique:
accepted:
07
10
2020
revised:
05
10
2020
received:
22
09
2020
pubmed:
3
11
2020
medline:
26
1
2021
entrez:
2
11
2020
Statut:
ppublish
Résumé
The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomics by inferring the evolutionary history of genes and genomes. Our integrated genomic data are made available in a variety of ways, including genome browsers, search interfaces, specialist tools such as the Ensembl Variant Effect Predictor, download files and programmatic interfaces. Here, we present recent Ensembl developments including two new website portals. Ensembl Rapid Release (http://rapid.ensembl.org) is designed to provide core tools and services for genomes as soon as possible and has been deployed to support large biodiversity sequencing projects. Our SARS-CoV-2 genome browser (https://covid-19.ensembl.org) integrates our own annotation with publicly available genomic data from numerous sources to facilitate the use of genomics in the international scientific response to the COVID-19 pandemic. We also report on other updates to our annotation resources, tools and services. All Ensembl data and software are freely available without restriction.
Identifiants
pubmed: 33137190
pii: 5952199
doi: 10.1093/nar/gkaa942
pmc: PMC7778975
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
D884-D891Subventions
Organisme : Wellcome Trust
ID : WT218328/B/19/Z
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : U41 HG010972
Pays : United States
Organisme : Wellcome Trust
ID : WT104947/Z/14/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT200990/Z/16/Z
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : U41 HG007823
Pays : United States
Organisme : Wellcome Trust
ID : 201535/Z/16/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT212925/Z/18/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT108749/Z/15/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT201535/Z/16/Z
Pays : United Kingdom
Organisme : NHGRI NIH HHS
ID : 2U24HG007497-05
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG007234
Pays : United States
Informations de copyright
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.
Références
Nat Biotechnol. 2012 Mar 07;30(3):224-6
pubmed: 22398613
Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7
pubmed: 25392425
Nucleic Acids Res. 2001 Jan 1;29(1):308-11
pubmed: 11125122
Nature. 2020 May;581(7809):434-443
pubmed: 32461654
Nucleic Acids Res. 2020 Jan 8;48(D1):D328-D334
pubmed: 31724716
Nature. 2015 Feb 19;518(7539):317-30
pubmed: 25693563
Genome Biol. 2015 Jan 29;16:21
pubmed: 25723810
Database (Oxford). 2018 Jan 1;2018:
pubmed: 30576484
Nature. 2001 Feb 15;409(6822):860-921
pubmed: 11237011
Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4325-4333
pubmed: 29686065
Nucleic Acids Res. 2018 Jan 4;46(D1):D239-D245
pubmed: 29156006
Nucleic Acids Res. 2019 Jan 8;47(D1):D745-D751
pubmed: 30407521
Nucleic Acids Res. 2011 Jan;39(Database issue):D15-8
pubmed: 21106499
Database (Oxford). 2016 Feb 20;2016:
pubmed: 26896847
Bioinformatics. 2014 Apr 1;30(7):1003-5
pubmed: 24227676
Genome Biol. 2016 Jun 06;17(1):122
pubmed: 27268795
Bioinformatics. 2014 May 1;30(9):1236-40
pubmed: 24451626
Bioinformatics. 2015 Jan 1;31(1):143-5
pubmed: 25236461
Nature. 2020 Aug;584(7821):403-409
pubmed: 32760000
Cell. 2019 Jan 24;176(3):535-548.e24
pubmed: 30661751
Nucleic Acids Res. 2019 Jan 8;47(D1):D506-D515
pubmed: 30395287
Nucleic Acids Res. 2020 Jan 8;48(D1):D682-D688
pubmed: 31691826
Bioinformatics. 2018 Dec 1;34(23):4121-4123
pubmed: 29790939
Euro Surveill. 2017 Mar 30;22(13):
pubmed: 28382917
Nature. 2012 Sep 6;489(7414):57-74
pubmed: 22955616
Nucleic Acids Res. 2007 Jan;35(Database issue):D88-92
pubmed: 17130149
Wiley Interdiscip Rev Syst Biol Med. 2018 Jul;10(4):e1417
pubmed: 29474005
Database (Oxford). 2016 Feb 17;2016:
pubmed: 26888907
Nat Commun. 2019 Dec 16;10(1):5732
pubmed: 31844061
J Med Virol. 2020 Apr;92(4):418-423
pubmed: 31967327
Database (Oxford). 2017 Jan 1;2017(1):
pubmed: 28365736
Database (Oxford). 2016 Jun 23;2016:
pubmed: 27337980
Nucleic Acids Res. 2019 Jan 8;47(D1):D853-D858
pubmed: 30407534
Nucleic Acids Res. 2020 Jan 8;48(D1):D689-D695
pubmed: 31598706
Nucleic Acids Res. 2012 Dec;40(22):11189-201
pubmed: 23066108
Nucleic Acids Res. 2019 Jan 8;47(D1):D766-D773
pubmed: 30357393
Nucleic Acids Res. 2020 Jan 8;48(D1):D845-D855
pubmed: 31680165
Nucleic Acids Res. 2014 Jan;42(Database issue):D873-8
pubmed: 24285302
Nucleic Acids Res. 2014 Jan;42(Database issue):D980-5
pubmed: 24234437
Nucleic Acids Res. 2019 Jan 8;47(D1):D330-D338
pubmed: 30395331
Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45
pubmed: 26553804
Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):E6089-E6096
pubmed: 28696295
Mol Biochem Parasitol. 2017 Jul;215:2-10
pubmed: 27899279
Nucleic Acids Res. 2017 Jan 4;45(D1):D635-D642
pubmed: 27899575
Nature. 2020 Mar;579(7798):265-269
pubmed: 32015508
Genet Med. 2017 Feb;19(2):249-255
pubmed: 27854360