Jonathan M Mudge

Affiliations
  • European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Publications (18)

Ensembl 2023.

Nucleic acids research
Avec: Fergal J Martin , M Ridwan Amode , Alisha Aneja , Olanrewaju Austine-Orimoloye , Andrey G Azov , If Barnes , Arne Becker , Ruth Bennett , Andrew Berry , Jyothish Bhai , Simarpreet Kaur Bhurji , Alexandra Bignell , Sanjay Boddu , Paulo R Branco Lins , Lucy Brooks , Shashank Budhanuru Ramaraju , Mehrnaz Charkhchi , Alexander Cockburn , Luca Da Rin Fiorretto , Claire Davidson , Kamalkumar Dodiya , Sarah Donaldson , Bilal El Houdaigui , Tamara El Naboulsi , Reham Fatima , Carlos Garcia Giron , Thiago Genez , Gurpreet S Ghattaoraya , Jose Gonzalez Martinez , Cristi Guijarro , Matthew Hardy , Zoe Hollis , Thibaut Hourlier , Toby Hunt , Mike Kay , Vinay Kaykala , Tuan Le , Diana Lemos , Diego Marques-Coelho , José Carlos Marugán , Gabriela Alejandra Merino , Louisse Paola Mirabueno , Aleena Mushtaq , Syed Nakib Hossain , Denye N Ogeh , Manoj Pandian Sakthivel , Anne Parker , Malcolm Perry , Ivana Piližota , Irina Prosovetskaia , José G Pérez-Silva , Ahamed Imran Abdul Salam , Nuno Saraiva-Agostinho , Helen Schuilenburg , Dan Sheppard , Swati Sinha , Botond Sipos , William Stark , Emily Steed , Ranjit Sukumaran , Dulika Sumathipala , Marie-Marthe Suner , Likhitha Surapaneni , Kyösti Sutinen , Michal Szpak , Francesca Floriana Tricomi , David Urbina-Gómez , Andres Veidenberg , Thomas A Walsh , Brandon Walts , Elizabeth Wass , Natalie Willhoft , Jamie Allen , Jorge Alvarez-Jarreta , Marc Chakiachvili , Bethany Flint , Stefano Giorgetti , Leanne Haggerty , Garth R Ilsley , Jane E Loveland , Benjamin Moore , Jonathan M Mudge , John Tate , David Thybert , Stephen J Trevanion , Andrea Winterbottom , Adam Frankish , Sarah E Hunt , Magali Ruffier , Fiona Cunningham , Sarah Dyer , Robert D Finn , Kevin L Howe , Peter W Harrison , Andrew D Yates , Paul Flicek

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.

Nature methods
Avec: Francisco J Pardo-Palacios , Dingjie Wang , Fairlie Reese , Mark Diekhans , Sílvia Carbonell-Sala , Brian Williams , Jane E Loveland , Maite De María , Matthew S Adams , Gabriela Balderrama-Gutierrez , Amit K Behera , Jose M Gonzalez Martinez , Toby Hunt , Julien Lagarde , Cindy E Liang , Haoran Li , Marcus Jerryd Meade , David A Moraga Amador , Andrey D Prjibelski , Inanc Birol , Hamed Bostan , Ashley M Brooks , Muhammed Hasan Çelik , Ying Chen , Mei R M Du , Colette Felton , Jonathan Göke , Saber Hafezqorani , Ralf Herwig , Hideya Kawaji , Joseph Lee , Jian-Liang Li , Matthias Lienhard , Alla Mikheenko , Dennis Mulligan , Ka Ming Nip , Mihaela Pertea , Matthew E Ritchie , Andre D Sim , Alison D Tang , Yuk Kei Wan , Changqing Wang , Brandon Y Wong , Chen Yang , If Barnes , Andrew E Berry , Salvador Capella-Gutierrez , Alyssa Cousineau , Namrita Dhillon , Jose M Fernandez-Gonzalez , Luis Ferrández-Peral , Natàlia Garcia-Reyero , Stefan Götz , Carles Hernández-Ferrer , Liudmyla Kondratova , Tianyuan Liu , Alessandra Martinez-Martin , Carlos Menor , Jorge Mestre-Tomás , Jonathan M Mudge , Nedka G Panayotova , Alejandro Paniagua , Dmitry Repchevsky , Xingjie Ren , Eric Rouchka , Brandon Saint-John , Enrique Sapena , Leon Sheynkman , Melissa Laird Smith , Marie-Marthe Suner , Hazuki Takahashi , Ingrid A Youngworth , Piero Carninci , Nancy D Denslow , Roderic Guigó , Margaret E Hunter , Rene Maehr , Yin Shen , Hagen U Tilgner , Barbara J Wold , Christopher Vollmers , Adam Frankish , Kin Fai Au , Gloria M Sheynkman , Ali Mortazavi , Ana Conesa , Angela N Brooks

Réseau de co-auteurs

Adam Frankish 11 collaborations
Paul Flicek 8 collaborations
Irwin Jungreis 6 collaborations
Fergal J Martin 6 collaborations
Manolis Kellis 6 collaborations
Jane E Loveland 5 collaborations
Fiona Cunningham 5 collaborations
Thibaut Hourlier 5 collaborations
Osagie G Izuogu 5 collaborations
Anne Parker 5 collaborations
Magali Ruffier 5 collaborations
Marie-Marthe Suner 5 collaborations
Mark Diekhans 4 collaborations
If Barnes 4 collaborations
Tiago Grego 4 collaborations
Kevin L Howe 4 collaborations
Toby Hunt 4 collaborations
Shamika Mohanan 4 collaborations
Bianca M Schmitt 4 collaborations
Roderic Guigó 4 collaborations
Sanjay M Sisodiya 4 collaborations
Julien Lagarde 3 collaborations
Andrew Berry 3 collaborations
Alexandra Bignell 3 collaborations
Sarah Donaldson 3 collaborations
Matthew Hardy 3 collaborations
Fernando Pozo 3 collaborations
Michael L Tress 3 collaborations
Susanna Pagni 3 collaborations
Andrew D Yates 3 collaborations
Jamie Allen 3 collaborations
Jorge Alvarez-Jarreta 3 collaborations
M Ridwan Amode 3 collaborations
Andrey G Azov 3 collaborations
Ruth Bennett 3 collaborations
Jyothish Bhai 3 collaborations
Sanjay Boddu 3 collaborations
José Carlos Marugán 3 collaborations
Claire Davidson 3 collaborations
Kamalkumar Dodiya 3 collaborations
Reham Fatima 3 collaborations
Carlos Garcia Giron 3 collaborations
Leanne Haggerty 3 collaborations
Mike Kay 3 collaborations
Tuan Le 3 collaborations
Diana Lemos 3 collaborations
Jose Gonzalez Martinez 3 collaborations
Benjamin Moore 3 collaborations
Helen Schuilenburg 3 collaborations
Dan Sheppard 3 collaborations
Brandon Walts 3 collaborations
Andrea Winterbottom 3 collaborations
Marc Chakiachvili 3 collaborations
Bethany Flint 3 collaborations
Sarah E Hunt 3 collaborations
Stephen J Trevanion 3 collaborations
Cristina Sisu 2 collaborations
Joel Armstrong 2 collaborations
Silvia Carbonell Sala 2 collaborations
Tomás Di Domenico 2 collaborations
Ian T Fiddes 2 collaborations
Carlos García Girón 2 collaborations
Jose Manuel Gonzalez 2 collaborations
Rory Johnson 2 collaborations
Laura Martínez 2 collaborations
Paul Muir 2 collaborations
Fabio C P Navarro 2 collaborations
Baikang Pei 2 collaborations
Eloise Stapleton 2 collaborations
Irina Sycheva 2 collaborations
Jinuri Xu 2 collaborations
Andrew Yates 2 collaborations
Daniel Zerbino 2 collaborations
Yan Zhang 2 collaborations
Jyoti S Choudhary 2 collaborations
Mark Gerstein 2 collaborations
Tim J P Hubbard 2 collaborations
Benedict Paten 2 collaborations
A M Whited 2 collaborations
Jeffre Allen 2 collaborations
Loren E Hough 2 collaborations
Helena Martins Custodio 2 collaborations
James D Mills 2 collaborations
Premanand Achuthan 2 collaborations
James Allen 2 collaborations
Irina M Armean 2 collaborations
Konstantinos Billis 2 collaborations
Carla Cummins 2 collaborations
Astrid Gall 2 collaborations
Thomas Juettemann 2 collaborations
Ilias Lavidas 2 collaborations
Thomas Maurel 2 collaborations
Denye N Oheh 2 collaborations
Andrew Parton 2 collaborations
Manoj Pandian Sakthivel 2 collaborations
Marek Szuba 2 collaborations
Kieron Taylor 2 collaborations
Anja Thormann 2 collaborations
Glen Threadgold 2 collaborations
Myrto Kostadima 2 collaborations
Nick Langridge 2 collaborations
Matthieu Muffato 2 collaborations
Emily Perry 2 collaborations
Daniel R Zerbino 2 collaborations
Mehrnaz Charkhchi 2 collaborations
Bilal El Houdaigui 2 collaborations
Irina Prosovetskaia 2 collaborations
Emily Steed 2 collaborations
Michal Szpak 2 collaborations
John Tate 2 collaborations
David Thybert 2 collaborations
Pavel V Baranov 2 collaborations
James C Wright 1 collaboration
Carles Boix 1 collaboration
Ferriol Calvet Riera 1 collaboration
Maxim Y Wolf 1 collaboration
Yucheng T Yang 1 collaboration
Dhoyazan Azazi 1 collaboration
Duncan T Odom 1 collaboration
Anne-Maud Ferreira 1 collaboration
Jane Loveland 1 collaboration
James Wright 1 collaboration
Jacqueline Chrast 1 collaboration
Bronwen Aken 1 collaboration
Alexandre Reymond 1 collaboration
Christina L Cleveland 1 collaboration
John L Rinn 1 collaboration
Clara-L Sandmann 1 collaboration
Jana F Schulz 1 collaboration
Jorge Ruiz-Orera 1 collaboration
Marieluise Kirchner 1 collaboration
Matthias Ziehm 1 collaboration
Eleonora Adami 1 collaboration
Maike Marczenke 1 collaboration
Annabel Christ 1 collaboration
Nina Liebe 1 collaboration
Johannes Greiner 1 collaboration
Aaron Schoenenberger 1 collaboration
Michael B Muecke 1 collaboration
Ning Liang 1 collaboration
Robert L Moritz 1 collaboration
Zhi Sun 1 collaboration
Eric W Deutsch 1 collaboration
Michael Gotthardt 1 collaboration
John R Prensner 1 collaboration
Thomas E Willnow 1 collaboration
Philipp Mertins 1 collaboration
Sebastiaan van Heesch 1 collaboration
Norbert Hubner 1 collaboration
Wasiu Akanni 1 collaboration
Laurent Gil 1 collaboration
Erin Haskell 1 collaboration
Sophie H Janacek 1 collaboration
Mark McDowall 1 collaboration
Aoife McMahon 1 collaboration
Michael Nuhn 1 collaboration
Mateus Patricio 1 collaboration
Mira Sycheva 1 collaboration
Alessandro Vullo 1 collaboration
Amonida Zadissa 1 collaboration
Garth IIsley 1 collaboration
Joannella Morales 1 collaboration
Laura Martinez-Gomez 1 collaboration
Federico Abascal 1 collaboration
Luca Da Rin Fioretto 1 collaboration
Anmol Hemrom 1 collaboration
Vinay Kaikala 1 collaboration
Aoife C McMahon 1 collaboration
Dimitrios Paraschas 1 collaboration
Manoj P Sakthivel 1 collaboration
Ahamed I Abdul Salam 1 collaboration
Ameya Chaubal 1 collaboration
Nishadi De Silva 1 collaboration
Garth R IIsley 1 collaboration
Joanella Morales 1 collaboration
Katri Silvennoinen 1 collaboration
Kinga Gawel 1 collaboration
Despina Tsortouktzidis 1 collaboration
Julika Pitsch 1 collaboration
Saud Alhusaini 1 collaboration
Karen M J van Loo 1 collaboration
Richard Picardo 1 collaboration
Zuzanna Michalak 1 collaboration
James Mills 1 collaboration
Christopher D Whelan 1 collaboration
Greig I de Zubicaray 1 collaboration
Katie L McMahon 1 collaboration
Wietske van der Ent 1 collaboration
Ettore Tiraboschi 1 collaboration
Maria Thom 1 collaboration
Margaret J Wright 1 collaboration
Paul M Thompson 1 collaboration
Susanne Schoch 1 collaboration
Albert J Becker 1 collaboration
Camila V Esguerra 1 collaboration
Alisha Aneja 1 collaboration
Arne Becker 1 collaboration
Simarpreet Kaur Bhurji 1 collaboration
Paulo R Branco Lins 1 collaboration
Lucy Brooks 1 collaboration
Alexander Cockburn 1 collaboration
Luca Da Rin Fiorretto 1 collaboration
Tamara El Naboulsi 1 collaboration
Thiago Genez 1 collaboration
Gurpreet S Ghattaoraya 1 collaboration
Cristi Guijarro 1 collaboration
Zoe Hollis 1 collaboration
Vinay Kaykala 1 collaboration
Diego Marques-Coelho 1 collaboration
Aleena Mushtaq 1 collaboration
Syed Nakib Hossain 1 collaboration
Denye N Ogeh 1 collaboration
Malcolm Perry 1 collaboration
Ivana Piližota 1 collaboration
José G Pérez-Silva 1 collaboration
Nuno Saraiva-Agostinho 1 collaboration
Swati Sinha 1 collaboration
Botond Sipos 1 collaboration
William Stark 1 collaboration
Ranjit Sukumaran 1 collaboration
Dulika Sumathipala 1 collaboration
Likhitha Surapaneni 1 collaboration
Kyösti Sutinen 1 collaboration
David Urbina-Gómez 1 collaboration
Andres Veidenberg 1 collaboration
Thomas A Walsh 1 collaboration
Elizabeth Wass 1 collaboration
Natalie Willhoft 1 collaboration
Stefano Giorgetti 1 collaboration
Garth R Ilsley 1 collaboration
Sarah Dyer 1 collaboration
Robert D Finn 1 collaboration
Peter W Harrison 1 collaboration
Jack A S Tierney 1 collaboration
Michał Świrski 1 collaboration
Håkon Tjeldnes 1 collaboration
Joanna Kufel 1 collaboration
Nicola Whiffin 1 collaboration
Eivind Valen 1 collaboration
Yousuf A Khan 1 collaboration
Raffaella De Pace 1 collaboration
Gionmattia Carancini 1 collaboration
Ji Wang 1 collaboration
John F Atkins 1 collaboration
Andrew E Firth 1 collaboration
Juan S Bonifacino 1 collaboration
Gary Loughran 1 collaboration
Luigi Grassi 1 collaboration
Natasha A N Jorge 1 collaboration
Denis Seyres 1 collaboration
Mariona Bustamante 1 collaboration
Frances Burden 1 collaboration
Samantha Farrow 1 collaboration
Neda Farahi 1 collaboration
Romina Petersen 1 collaboration
John J Lambourne 1 collaboration
Sophia Rowlston 1 collaboration
Enca Martin-Rendon 1 collaboration
Laura Clarke 1 collaboration
Kate Downes 1 collaboration
Xavier Estivill 1 collaboration
Joost H A Martens 1 collaboration
Marie-Laure Yaspo 1 collaboration
Hendrik G Stunnenberg 1 collaboration
Willem H Ouwehand 1 collaboration
Fabio Passetti 1 collaboration
Ernest Turro 1 collaboration
Mattia Frontini 1 collaboration
Charles A Steward 1 collaboration
Jolien Roovers 1 collaboration
Jose M Gonzalez 1 collaboration
Dmitri Pervouchine 1 collaboration
Stephen Fitzgerald 1 collaboration
Margarida Viola 1 collaboration
Hannah Stamberger 1 collaboration
Fadi F Hamdan 1 collaboration
Berten Ceulemans 1 collaboration
Patricia Leroy 1 collaboration
Caroline Nava 1 collaboration
Anne Lepine 1 collaboration
Electra Tapanari 1 collaboration
Don Keiller 1 collaboration
Stephen Abbs 1 collaboration
Alba Sanchis-Juan 1 collaboration
Detelina Grozeva 1 collaboration
Anthony S Rogers 1 collaboration
Robert Petryszak 1 collaboration
Berge A Minassian 1 collaboration
Gianpiero Cavalleri 1 collaboration
Dimitrios Vitsios 1 collaboration
Slavé Petrovski 1 collaboration
Jennifer Harrow 1 collaboration
F Lucy Raymond 1 collaboration
Nicholas J Lench 1 collaboration
Peter De Jonghe 1 collaboration
Sarah Weckhuysen 1 collaboration
Dingjie Wang 1 collaboration
Fairlie Reese 1 collaboration
Sílvia Carbonell-Sala 1 collaboration
Brian Williams 1 collaboration
Maite De María 1 collaboration
Matthew S Adams 1 collaboration
Amit K Behera 1 collaboration
Cindy E Liang 1 collaboration
Haoran Li 1 collaboration
Marcus Jerryd Meade 1 collaboration
David A Moraga Amador 1 collaboration
Andrey D Prjibelski 1 collaboration
Inanc Birol 1 collaboration
Hamed Bostan 1 collaboration
Ashley M Brooks 1 collaboration
Muhammed Hasan Çelik 1 collaboration
Ying Chen 1 collaboration
Mei R M Du 1 collaboration
Colette Felton 1 collaboration
Jonathan Göke 1 collaboration
Saber Hafezqorani 1 collaboration
Ralf Herwig 1 collaboration
Hideya Kawaji 1 collaboration
Joseph Lee 1 collaboration
Jian-Liang Li 1 collaboration
Matthias Lienhard 1 collaboration
Alla Mikheenko 1 collaboration
Dennis Mulligan 1 collaboration
Ka Ming Nip 1 collaboration
Mihaela Pertea 1 collaboration
Matthew E Ritchie 1 collaboration
Andre D Sim 1 collaboration
Alison D Tang 1 collaboration
Yuk Kei Wan 1 collaboration
Changqing Wang 1 collaboration
Brandon Y Wong 1 collaboration
Chen Yang 1 collaboration
Andrew E Berry 1 collaboration
Alyssa Cousineau 1 collaboration
Namrita Dhillon 1 collaboration
Luis Ferrández-Peral 1 collaboration
Natàlia Garcia-Reyero 1 collaboration
Stefan Götz 1 collaboration
Liudmyla Kondratova 1 collaboration
Tianyuan Liu 1 collaboration
Carlos Menor 1 collaboration
Jorge Mestre-Tomás 1 collaboration
Nedka G Panayotova 1 collaboration
Alejandro Paniagua 1 collaboration
Dmitry Repchevsky 1 collaboration
Xingjie Ren 1 collaboration
Eric Rouchka 1 collaboration
Brandon Saint-John 1 collaboration
Enrique Sapena 1 collaboration
Leon Sheynkman 1 collaboration
Melissa Laird Smith 1 collaboration
Hazuki Takahashi 1 collaboration
Ingrid A Youngworth 1 collaboration
Piero Carninci 1 collaboration
Nancy D Denslow 1 collaboration
Margaret E Hunter 1 collaboration
Rene Maehr 1 collaboration
Yin Shen 1 collaboration
Hagen U Tilgner 1 collaboration
Barbara J Wold 1 collaboration
Christopher Vollmers 1 collaboration
Kin Fai Au 1 collaboration
Gloria M Sheynkman 1 collaboration
Ali Mortazavi 1 collaboration
Ana Conesa 1 collaboration
Angela N Brooks 1 collaboration
Christina Cleveland 1 collaboration
John Rinn 1 collaboration