Characterization of Cystathionine β-Synthase TtCbs1 and Cysteine Synthase TtCsa1 Involved in Cysteine Biosynthesis in Tetrahymena thermophila.


Journal

The Journal of eukaryotic microbiology
ISSN: 1550-7408
Titre abrégé: J Eukaryot Microbiol
Pays: United States
ID NLM: 9306405

Informations de publication

Date de publication:
03 2021
Historique:
received: 03 07 2020
revised: 21 10 2020
accepted: 07 11 2020
pubmed: 16 11 2020
medline: 29 10 2021
entrez: 15 11 2020
Statut: ppublish

Résumé

Cysteine is implicated in important biological processes. It is synthesized through two different pathways. Cystathionine β-synthase and cystathionine γ-lyase participate in the reverse transsulfuration pathway, while serine acetyltransferase and cysteine synthase function in the de novo pathway. Two evolutionarily related pyridoxal 5'-phosphate-dependent enzymes, cystathionine β-synthase TtCBS1 (TTHERM_00558300) and cysteine synthase TtCSA1 (TTHERM_00239430), were identified from a freshwater protozoan Tetrahymena thermophila. TtCbs1 contained the N-terminal heme binding domain, catalytic domain, and C-terminal regulatory domain, whereas TtCsa1 consisted of two α/β domains. The catalytic core of the two enzymes is similar. TtCBS1 and TtCSA1 showed high expression levels in the vegetative growth stage and decreased during the sexual developmental stage. TtCbs1 and TtCsa1 were localized in the cytoplasm throughout different developmental stages. His-TtCbs1 and His-TtCsa1 were expressed and purified in vitro. TtCbs1 catalyzed the canonical reaction with the highest velocity and possessed serine sulfhydrylase activity. TtCsa1 showed cysteine synthase activity with high K

Identifiants

pubmed: 33190347
doi: 10.1111/jeu.12834
doi:

Substances chimiques

Cysteine Synthase EC 2.5.1.47
Cystathionine beta-Synthase EC 4.2.1.22
Cystathionine gamma-Lyase EC 4.4.1.1
Cysteine K848JZ4886

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e12834

Informations de copyright

© 2020 International Society of Protistologists.

Références

Alexander, F. W., Sandmeier, E., Mehta, P. K. & Christen, P. 1994. Evolutionary relationships among pyridoxal-5′-phosphate-dependent enzymes. Regio-specific α, β and γ families. Eur. J. Biochem., 219:953-960.
Bogdanova, N. & Hell, R. 1997. Cysteine synthesis in plants: protein-protein interactions of serine acetyltransferase from Arabidopsis thaliana. Plant J., 11:251-262.
Burkhard, P., Rao, G. S., Hohenester, E., Schnackerz, K. D., Cook, P. F. & Jansonius, J. N. 1998. Three-dimensional structure of O-acetylserine sulfhydrylase from Salmonella typhimurium. J. Mol. Biol., 283:121-133.
Cassidy-Hanley, D. M. 2012. Tetrahymena in the laboratory: strain resources, methods for culture, maintenance, and storage. Methods Cell Biol., 109:237-276.
Cassidy-Hanley, D., Bowen, J., Lee, J. H., Cole, E., VerPlank, L. A., Gaertig, J., Gorovsky, M. A. & Bruns, P. J. 1997. Germline and somatic transformation of mating Tetrahymena thermophila by particle bombardment. Genetics, 146:135-147.
Chao, W. & Reynolds, R. D. 2009. Taurine-deficient diet up-regulated cystathionine β-synthase monoallele in hemizygous cystathionine β-synthase knockout mice. Nutr. Res., 29:794-801.
Chen, X., Jhee, K. & Kruger, W. D. 2004. Production of the neuromodulator H2S by cystathionine β-synthase via the condensation of cysteine and homocysteine. J. Biol. Chem., 279:52082-52086.
Chiku, T., Padovani, D., Zhu, W., Singh, S., Vitvitsky, V. & Banerjee, R. 2009. H2S biogenesis by human cystathionine γ-lyase leads to the novel sulfur metabolites lanthionine and homolanthionine and is responsive to the grade of hyperhomocysteinemia. J. Biol. Chem., 284:11601-11612.
Devi, S., Abdul Rehman, S. A., Tarique, K. F. & Gourinath, S. 2017. Structural characterization and functional analysis of cystathionine β-synthase: an enzyme involved in the reverse transsulfuration pathway of Bacillus Anthracis. FEBS J., 284:3862-3880.
Devi, S., Tarique, K. F., Ali, M. F., Rehman, S. A. A. & Gourinath, S. 2019. Identification and characterization of Helicobacter pylori O-acetylserine-dependent cystathionine β-synthase, a distinct member of the PLP-II family. Mol. Microbiol., 112:718-739.
Dharavath, S., Raj, I. & Gourinath, S. 2017. Structure-based mutational studies of O-acetylserine sulfhydrylase reveal the reason for the loss of cysteine synthase complex formation in Brucella abortus. Biochem. J., 474:1221-1239.
Eisen, J. A., Coyne, R. S., Wu, M., Wu, D., Thiagarajan, M., Wortman, J. R., Badger, J. H., Ren, Q., Amedeo, P., Jones, K. M., Tallon, L. J., Delcher, A. L., Salzberg, S. L., Silva, J. C., Haas, B. J., Majoros, W. H., Farzad, M., Carlton, J. M., Smith Jr, R. K., Garg, J., Pearlman, R. E., Karrer, K. M., Sun, L., Manning, G., Elde, N. C., Turkewitz, A. P., Asai, D. J., Wilkes, D. E., Wang, Y., Cai, H., Collins, K., Andrew Stewart, B., Lee, S. R., Wilamowska, K., Weinberg, Z., Ruzzo, W. L., Wloga, D., Gaertig, J., Frankel, J., Tsao, C., Gorovsky, M. A., Keeling, P. J., Waller, R. F., Patron, N. J., Michael Cherry, J., Stover, N. A., Krieger, C. J., del Toro, C., Ryder, H. F., Williamson, S. C., Barbeau, R. A., Hamilton, E. P. & Orias, E. 2006. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol., 4:e286.
Ereño-Orbea, J., Majtan, T., Oyenarte, I., Kraus, J. P. & Martínez-Cruz, L. A. 2013. Structural basis of regulation and oligomerization of human cystathionine β-synthase, the central enzyme of transsulfuration. Proc. Natl Acad. Sci. USA, 110:E3790-E3799.
Ereño-Orbea, J., Majtan, T., Oyenarte, I., Kraus, J. P. & Martínez-Cruz, L. A. 2014. Structural insight into the molecular mechanism of allosteric activation of human cystathionine β-synthase by S-adenosylmethionine. Proc. Natl Acad. Sci. USA, 111:E3845-3852.
Evande, R., Ojha, S. & Banerjee, R. 2004. Visualization of PLP-bound intermediates in hemeless variants of human cystathionine β-synthase: evidence that lysine 119 is a general base. Arch. Biochem. Biophys., 427:188-196.
Finkelstein, J. D., Kyle, W. E., Martin, J. L. & Pick, A. M. 1975. Activation of cystathionine synthase by adenosylmethionine and adenosylmethionine. Biochem. Biophys. Res. Commun., 66:81-87.
Frank, N., Kent, J. O., Meier, M. & Kraus, J. P. 2008. Purification and characterization of the wild type and truncated human cystathionine β-synthase enzymes expressed in E. coli. Arch. Biochem. Biophys., 470:64-72.
Fyfe, P. K., Westrop, G. D., Ramos, T., Müller, S., Coombs, G. H. & Hunter, W. N. 2012. Structure of Leishmania major cysteine synthase. Acta Crystallogr. Sect. F. Struct. Biol. Cryst. Commun., 68:738-743.
Gaitonde, M. K. 1967. A spectrophotometric method for the direct determination of cysteine in the presence of other naturally occurring amino acids. Biochem. J., 104:627-633.
Giménez-Mascarell, P., Majtan, T., Oyenarte, I., Ereño-Orbea, J., Majtan, J., Klaudiny, J., Kraus, J. P. & Martínez-Cruz, L. A. 2018. Crystal structure of cystathionine β-synthase from honeybee Apis mellifera. J. Struct. Biol., 202:82-93.
Han, T., Xu, J. & Wang, W. 2019. Expression, localization and functional analysis of cystathionine γ-lyase Cgl1 from Tetrahymena thermophila. Chin. J. Biochem. Mol. Biol., 35:286-295.
Jhee, K. H., McPhie, P. & Miles, E. W. 2000. Yeast cystathionine β-synthase is a pyridoxal phosphate enzyme but, unlike the human enzyme, is not a heme protein. J. Biol. Chem., 275:11541-11544.
Kashiwamata, S. & Greenberg, D. M. 1970. Studies on cystathionine synthase of rat liver properties of the highly purified enzyme. Biochim. Biophys. Acta., 212:488-500.
Kery, V., Bukovska, G. & Kraus, J. P. 1994. Transsulfuration depends on heme in addition to pyridoxal 5'-phosphate. Cystathionine beta-synthase is a heme protein. J Biol Chem, 269(41):25283-25288.
Larionov, A., Krause, A. & Miller, W. 2005. A standard curve based method for relative real time PCR data processing. BMC Bioinformatics, 6:62.
Liang, H., Xu, J., Zhao, D., Tian, H., Yang, X., Liang, A. & Wang, W. 2012. Subcellular localization and role of Ran1 in Tetrahymena thermophila amitotic macronucleus. FEBS J., 279:2520-2533.
Livak, K. J. & Schmittgen, T. D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods, 25:402-408.
Majtan, T., Krijt, J., Sokolová, J., Křížková, M., Ralat, M. A., Kent, J., Gregory 3rd, J. F., Kožich, V. & Kraus, J. P. 2018. Biogenesis of hydrogen sulfide and thioethers by cystathionine beta-synthase. Antioxid. Redox. Signal., 28:311-323.
Majtan, T., Pey, A. L., Fernández, R., Fernández, J. A., Martínez-Cruz, L. A. & Kraus, J. P. 2014. Domain organization, catalysis and regulation of eukaryotic cystathionine beta-synthases. PLoS One, 9:e105290.
Maresi, E., Janson, G., Fruncillo, S., Paiardini, A., Vallone, R., Dominici, P. & Astegno, A. 2018. Functional characterization and structure-guided mutational analysis of the transsulfuration enzyme cystathionine γ-lyase from Toxoplasma gondii. Int. J. Mol. Sci., 19:2111.
Matoba, Y., Yoshida, T., Izuhara-Kihara, H., Noda, M. & Sugiyama, M. 2017. Crystallographic and mutational analyses of cystathionine β-synthase in the H2S-synthetic gene cluster in Lactobacillus plantarum. Protein Sci., 26:763-783.
Mccorvie, T. J., Kopec, J., Hyung, S. J., Fitzpatrick, F., Feng, X., Termine, D., Strain-Damerell, C., Vollmar, M., Fleming, J., Janz, J. M., Bulawa, C. & Yue, W. W. 2014. Inter-domain communication of human cystathionine β-synthase: structural basis of S-adenosyl-L-methionine activation. J. Biol. Chem., 289:36018-36030.
Mehta, P. K. & Christen, P. 2000. The molecular evolution of pyridoxal-5'-phosphate-dependent enzymes. Adv. Enzymol. Relat. Areas. Mol. Biol., 74:129-184.
Meier, M., Janosik, M., Kery, V., Kraus, J. P. & Burkhard, P. 2001. Structure of human cystathionine beta-synthase: a unique pyridoxal 5'-phosphate-dependent heme protein. EMBO J., 20:3910-3916.
Miao, W., Xiong, J., Bowen, J., Wang, W., Liu, Y., Braguinets, O., Grigull, J., Pearlman, R. E., Orias, E. & Gorovsky, M. A. 2009. Microarray analyses of gene expression during the Tetrahymena thermophila life cycle. PLoS One, 4:e4429.
Miles, E. W. & Kraus, J. P. 2004. Cystathionine β-synthase: structure, function, regulation, and location of homocystinuria-causing mutations. J. Biol. Chem., 279:29871-29874.
Miller, T. W., Wang, E. A., Gould, S., Stein, E. V., Kaur, S., Lim, L., Amarnath, S., Fowler, D. H. & Roberts, D. D. 2012. Hydrogen sulfide is an endogenous potentiator of T cell activation. J. Biol. Chem., 287:4211-4221.
Nozaki, T., Shigeta, Y., Saito-Nakano, Y., Imada, M. & Kruger, W. D. 2001. Characterization of transsulfuration and cysteine biosynthetic pathways in the protozoan Hemoflagellate, Trypanosoma cruzi. Isolation and molecular characterization of cystathionine beta-synthase and serine acetyltransferase from Trypanosoma. J. Biol. Chem., 276:6516-6523.
Omura, T., Sadano, H., Hasegawa, T., Yoshida, Y. & Kominami, S. 1984. Hemoprotein H-450 identified as a form of cytochrome P-450 having an endogenous ligand at the 6th coordination position of the heme. J. Biochem., 96:1491-1500.
Paul, B. D., Sbodio, J. I. & Snyder, S. H. 2018. Cysteine metabolism in neuronal redox homeostasis. Trends Pharmacol. Sci., 39:513-524.
Pong, W. W., Stouracova, R., Frank, N., Kraus, J. P. & Eldred, W. D. 2007. Comparative localization of cystathionine β-synthase and cystathionine γ-lyase in retina: differences between amphibians and mammals. J. Comp. Neurol., 505:158-165.
Raj, I., Kumar, S. & Gourinath, S. 2012. The narrow active-site cleft of O-acetylserine sulfhydrylase from Leishmania donovani allows complex formation with serine acetyltransferases with a range of C-terminal sequences. Acta Crystallogr. D. Biol. Crystallog., 68:909-919.
Robert, X. & Gouet, P. 2014. Deciphering key features in protein structures with the new ENDscript server. Nucleic. Acids. Res., 42:W320-W324.
Romero, I., Téllez, J., Romanha, A. J., Steindel, M. & Grisard, E. C. 2015. Upregulation of cysteine synthase and cystathionine β-synthase contributes to Leishmania braziliensis survival under oxidative stress. Antimicrob. Agents Chemother., 59:4770-4781.
Romero, I., Téllez, J., Yamanaka, L. E., Steindel, M., Romanha, A. J. & Grisard, E. C. 2014. Transsulfuration is an active pathway for cysteine biosynthesis in Trypanosoma rangeli. Parasit. Vectors, 7:197.
Ruehle, M. D., Orias, E. & Pearson, C. G. 2016. Tetrahymena as a unicellular model eukaryote: genetic and genomic tools. Genetics, 203:649-665.
Schnell, R., Oehlmann, W., Singh, M. & Schneider, G. 2007. Structural insights into catalysis and inhibition of O-acetylserine sulfhydrylase from Mycobacterium tuberculosis: crystal structures of the enzyme α-aminoacrylate intermediate and an enzyme-inhibitor complex. J. Biol. Chem., 282:23473-23481.
Seeliger, D. & de Groot, B. L. 2010. Ligand docking and binding site analysis with PyMOL and Autodock/Vina. J. Comput. Aided. Mol. Des., 24:417-422.
Shatalin, K., Shatalina, E., Mironov, A. & Nudler, E. 2011. H2S: a universal defense against antibiotics in bacteria. Science, 334:986-990.
Sievers, F., Wilm, A., Dineen, D., Gibson, T. J., Karplus, K., Li, W., Lopez, R., McWilliam, H., Remmert, M., Söding, J., Thompson, J. D. & Higgins, D. G. 2011. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol., 7:539.
Singh, A. K., Ekka, M. K., Kaushik, A., Pandya, V., Singh, R. P., Banerjee, S., Mittal, M., Singh, V. & Kumaran, S. 2017. Substrate-induced facilitated dissociation of the competitive inhibitor from the active site of O-acetyl serine sulfhydrylase reveals a competitive-allostery mechanism. Biochemistry, 56:5011-5025.
Singh, K., Singh, K. P., Equbal, A., Suman, S. S., Zaidi, A., Garg, G., Pandey, K., Das, P. & Ali, V. 2016. Interaction between cysteine synthase and serine O-acetyltransferase proteins and their stage specific expression in Leishmania donovani. Biochimie, 131:29-44.
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol., 28:2731-2739.
Taoka, S., Lepore, B. W., Kabil, O., Ojha, S., Ringe, D. & Banerjee, R. 2002. Human cystathionine β-synthase is a heme sensor protein. Evidence that the redox sensor is heme and not the vicinal cysteines in the CXXC motif seen in the crystal structure of the truncated enzyme. Biochemistry, 41:10454-10461.
Tu, Y., Kreinbring, C. A., Hill, M., Liu, C., Petsko, G. A., Mccune, C. D., Berkowitz, D. B., Liu, D. & Ringe, D. 2018. Crystal Structures of cystathionine β-synthase from Saccharomyces cerevisiae: one enzymatic step at a time. Biochemistry, 57:3134-3145.
Voskoboeva, E., Semyachkina, A., Yablonskaya, M. & Nikolaeva, E. 2017. Homocystinuria due to cystathionine beta-synthase (CBS) deficiency in Russia: molecular and clinical characterization. Mol. Genet. Metab. Rep., 14:47-54.
Vozdek, R., Hnízda, A., Krijt, J., Kostrouchová, M. & Kožich, V. 2012. Novel structural arrangement of nematode cystathionine β-synthases: characterization of Caenorhabditis elegans CBS-1. Biochem. J., 443:535-547.
Wang, Q. 2009. A molecular genetics study of the related to acetyltransferase 1 and 2 (RAT1 and RAT2) genes. Dissertation. Hunan University at Changsha, Hunan, China. Available from Hunan University.
Westrop, G. D., Goodall, G., Mottram, J. C. & Coombs, G. H. 2006. Cysteine biosynthesis in Trichomonas vaginalis involves cysteine synthase utilizing O-phosphoserine. J. Biol. Chem., 281:25062-25075.
Williams, R. A. M., Westrop, G. D. & Coombs, G. H. 2009. Two pathways for cysteine biosynthesis in Leishmania major. Biochem. J., 420:451-462.
Wirtz, M., Berkowitz, O., Droux, M. & Hell, R. 2001. The cysteine synthase complex from plants: mitochondrial serine acetyltransferase from Arabidopsis thaliana carries a bifunctional domain for catalysis and protein-protein interaction. Eur. J. Biochem., 268:686-693.
Xu, J., Tian, H., Liu, X., Wang, W. & Liang, A. 2013. Localization and functional analysis of HmgB3p, a novel protein containing high-mobility-group-box domain from Tetrahymena thermophila. Gene, 526:87-95.
Zhu, J., Berisa, M., Schwörer, S., Qin, W., Cross, J. R. & Thompson, C. B. 2019. Transsulfuration activity can support cell growth upon extracellular cysteine limitation. Cell Metab., 30:865-876.

Auteurs

Hongrui Lv (H)

School of Life Science, Shanxi University, Taiyuan, 030006, China.
Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan, 030006, China.

Jing Xu (J)

School of Life Science, Shanxi University, Taiyuan, 030006, China.
Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan, 030006, China.

Tao Bo (T)

Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan, 030006, China.

Wei Wang (W)

Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan, 030006, China.

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