Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.

Animals Genetic Predisposition to Disease Genetic Variation Genome Humans Macaca mulatta / genetics Molecular Sequence Annotation Polymorphism, Single Nucleotide Whole Genome Sequencing

Journal

Science (New York, N.Y.)
ISSN: 1095-9203
Titre abrégé: Science
Pays: United States
ID NLM: 0404511

Informations de publication

Date de publication:
18 12 2020
Historique:
received: 07 05 2020
accepted: 29 10 2020
entrez: 18 12 2020
pubmed: 19 12 2020
medline: 22 1 2021
Statut: ppublish

Résumé

The rhesus macaque (

Identifiants

DOI: 10.1126/science.abc6617 PMID: 33335035 PMC: PMC7818670
pubmed: 33335035
pii: 370/6523/eabc6617
doi: 10.1126/science.abc6617
pmc: PMC7818670
mid: NIHMS1662452
pii:
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : NHLBI NIH HHS
ID : U01 HL137183
Pays : United States
Organisme : NIH HHS
ID : P51 OD011107
Pays : United States
Organisme : NIH HHS
ID : P51 OD011104
Pays : United States
Organisme : NHGRI NIH HHS
ID : T32 HG008345
Pays : United States
Organisme : NHGRI NIH HHS
ID : R01 HG002939
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM059290
Pays : United States
Organisme : NIMH NIH HHS
ID : P50 MH100031
Pays : United States
Organisme : NIH HHS
ID : P51 OD011092
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG010961
Pays : United States
Organisme : NIH HHS
ID : P51 OD011132
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG010972
Pays : United States
Organisme : NIH HHS
ID : U42 OD024282
Pays : United States
Organisme : Howard Hughes Medical Institute
Pays : United States
Organisme : NIH HHS
ID : R24 OD010962
Pays : United States
Organisme : NHGRI NIH HHS
ID : T32 HG000035
Pays : United States
Organisme : NHGRI NIH HHS
ID : U41 HG007234
Pays : United States
Organisme : NHGRI NIH HHS
ID : R01 HG010329
Pays : United States
Organisme : NHGRI NIH HHS
ID : U24 HG009081
Pays : United States
Organisme : NIH HHS
ID : R24 OD021324
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH081884
Pays : United States
Organisme : NHGRI NIH HHS
ID : R01 HG010485
Pays : United States
Organisme : NIH HHS
ID : U42 OD010568
Pays : United States
Organisme : NHGRI NIH HHS
ID : U54 HG007990
Pays : United States
Organisme : NIH HHS
ID : R24 OD011173
Pays : United States
Organisme : NHGRI NIH HHS
ID : R01 HG002385
Pays : United States
Organisme : NIH HHS
ID : P51 OD011106
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH046729
Pays : United States
Organisme : NHGRI NIH HHS
ID : U24 HG009084
Pays : United States

Informations de copyright

Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Auteurs

Wesley C Warren (WC)

Department of Animal Sciences, Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA. warrenwc@missouri.edu jr13@bcm.edu eee@gs.washington.edu.
Department of Surgery, School of Medicine, University of Missouri, Columbia, MO 65211, USA.
Institute of Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA.
ORCID: 0000-0003-2255-2730

R Alan Harris (RA)

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
ORCID: 0000-0002-7333-4752

Marina Haukness (M)

Computational Genomics Laboratory, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0001-9991-8089

Ian T Fiddes (IT)

Inscripta Inc., Boulder, CO 80301, USA.
ORCID: 0000-0002-1580-7443

Shwetha C Murali (SC)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.

Jason Fernandes (J)

Department of Biomolecular Engineering, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0002-8625-1796

Philip C Dishuck (PC)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
ORCID: 0000-0003-2223-9787

Jessica M Storer (JM)

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Institue for Systems Biology, Seattle, WA 98109, USA.
ORCID: 0000-0002-9619-5265

Muthuswamy Raveendran (M)

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
ORCID: 0000-0001-6185-4059

LaDeana W Hillier (LW)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.

David Porubsky (D)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.

Yafei Mao (Y)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
ORCID: 0000-0002-9648-4278

David Gordon (D)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.
ORCID: 0000-0001-6552-4022

Mitchell R Vollger (MR)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
ORCID: 0000-0002-8651-1615

Alexandra P Lewis (AP)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
ORCID: 0000-0002-6195-4786

Katherine M Munson (KM)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
ORCID: 0000-0001-8413-6498

Elizabeth DeVogelaere (E)

Computational Genomics Laboratory, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.

Joel Armstrong (J)

Computational Genomics Laboratory, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0003-2077-4671

Mark Diekhans (M)

Computational Genomics Laboratory, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0002-0430-0989

Jerilyn A Walker (JA)

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

Chad Tomlinson (C)

McDonnell Genome Institute, Washington University, St. Louis, MO 63108, USA.
ORCID: 0000-0001-9905-6159

Tina A Graves-Lindsay (TA)

McDonnell Genome Institute, Washington University, St. Louis, MO 63108, USA.

Milinn Kremitzki (M)

McDonnell Genome Institute, Washington University, St. Louis, MO 63108, USA.

Sofie R Salama (SR)

Department of Biomolecular Engineering, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0001-6999-7193

Peter A Audano (PA)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
ORCID: 0000-0002-5187-0415

Merly Escalona (M)

Department of Biomolecular Engineering, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0003-0213-4777

Nicholas W Maurer (NW)

Department of Biomolecular Engineering, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0003-0007-7887

Francesca Antonacci (F)

Department of Biology, University of Bari 'Aldo Moro', 70125 Bari, Italy.
ORCID: 0000-0002-5833-6186

Ludovica Mercuri (L)

Department of Biology, University of Bari 'Aldo Moro', 70125 Bari, Italy.
ORCID: 0000-0002-3688-4501

Flavia A M Maggiolini (FAM)

Department of Biology, University of Bari 'Aldo Moro', 70125 Bari, Italy.
ORCID: 0000-0001-6832-9388

Claudia Rita Catacchio (CR)

Department of Biology, University of Bari 'Aldo Moro', 70125 Bari, Italy.
ORCID: 0000-0002-2166-723X

Jason G Underwood (JG)

Pacific Biosciences of California, Seattle, WA 94025, USA.

David H O'Connor (DH)

Department of Pathology and Laboratory Medicine, Wisconsin National Primate Research Center, University of Wisconsin-Madison, Madison, WI 53711, USA.
ORCID: 0000-0003-2139-470X

Ashley D Sanders (AD)

European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
ORCID: 0000-0003-3945-0677

Jan O Korbel (JO)

European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.

Betsy Ferguson (B)

Division of Genetics, Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, OR 97006, USA.
ORCID: 0000-0002-6992-3538

H Michael Kubisch (HM)

Tulane National Primate Research Center, Covington, LA 70433, USA.
ORCID: 0000-0001-6281-8420

Louis Picker (L)

Oregon National Primate Research Center and Vaccine and Gene Therapy Institute, Oregon Health Sciences University, Beaverton, OR 97006, USA.
ORCID: 0000-0003-0546-398X

Ned H Kalin (NH)

Department of Psychiatry, University of Wisconsin School of Medicine and Public Health, Madison, WI 53719, USA.

Douglas Rosene (D)

Department of Anatomy and Neurobiology, Boston University School of Medicine, Boston, MA 02118, USA.

Jon Levine (J)

Department of Neuroscience, University of Wisconsin, Madison, WI 53175, USA.
Wisconsin National Primate Research Center, University of Wisconsin, Madison, WI 53171, USA.
ORCID: 0000-0003-4177-6406

David H Abbott (DH)

Wisconsin National Primate Research Center, University of Wisconsin, Madison, WI 53171, USA.
Department of Obstetrics and Gynecology, Wisconsin National Primate Research Center, University of Wisconsin, Madison, WI 53715, USA.

Stanton B Gray (SB)

The University of Texas MD Anderson Cancer Center, Michale E. Keeling Center for Comparative Medicine and Research, Bastrop, TX 78602, USA.
ORCID: 0000-0002-8816-0898

Mar M Sanchez (MM)

Yerkes National Primate Research Center, Atlanta, GA 30329, USA.
Department of Psychiatry and Behavioral Sciences, Emory University School of Medicine, Atlanta, GA 30329, USA.
ORCID: 0000-0001-7701-2892

Zsofia A Kovacs-Balint (ZA)

Yerkes National Primate Research Center, Atlanta, GA 30329, USA.

Joseph W Kemnitz (JW)

Wisconsin National Primate Research Center, University of Wisconsin, Madison, WI 53171, USA.
Department of Cell and Regenerative Biology, University of Wisconsin, Madison, WI 53706, USA.
ORCID: 0000-0001-6511-404X

Sara M Thomasy (SM)

Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California-Davis, Davis, CA 95616, USA.
Department of Ophthalmology and Vision Science, School of Medicine, University of California-Davis, Davis, CA 95817, USA.
ORCID: 0000-0001-5617-9677

Jeffrey A Roberts (JA)

California National Primate Research Center, Davis, CA 95616, USA.
ORCID: 0000-0002-0159-6112

Erin L Kinnally (EL)

California National Primate Research Center, Davis, CA 95616, USA.
Department of Psychology, University of California, Davis, CA 95616, USA.

John P Capitanio (JP)

California National Primate Research Center, Davis, CA 95616, USA.
Department of Psychology, University of California, Davis, CA 95616, USA.
ORCID: 0000-0002-3680-1323

J H Pate Skene (JHP)

Department of Neurobiology, Duke University School of Medicine, Durham, NC 27710, USA.
ORCID: 0000-0003-3205-0697

Michael Platt (M)

Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
ORCID: 0000-0003-3912-8821

Shelley A Cole (SA)

Population Health Program, Texas Biomedical Research Institute and Southwest National Primate Research Center, San Antonio, TX 78227, USA.
ORCID: 0000-0002-2651-0127

Richard E Green (RE)

Department of Biomolecular Engineering, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0003-0516-5827

Mario Ventura (M)

Department of Biology, University of Bari 'Aldo Moro', 70125 Bari, Italy.
ORCID: 0000-0001-7762-8777

Roger W Wiseman (RW)

Department of Pathology and Laboratory Medicine, Wisconsin National Primate Research Center, University of Wisconsin-Madison, Madison, WI 53711, USA.
ORCID: 0000-0002-7682-7085

Benedict Paten (B)

Computational Genomics Laboratory, University of California-Santa Cruz, Santa Cruz, CA 95064, USA.
ORCID: 0000-0001-8863-3539

Mark A Batzer (MA)

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
ORCID: 0000-0001-5699-863X

Jeffrey Rogers (J)

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA. warrenwc@missouri.edu jr13@bcm.edu eee@gs.washington.edu.
ORCID: 0000-0002-7374-6490

Evan E Eichler (EE)

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA. warrenwc@missouri.edu jr13@bcm.edu eee@gs.washington.edu.
Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.
ORCID: 0000-0002-8246-4014

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Sequence diversity analyses of an improved...
questionsmedicales.fr › Phénomènes génétiques › Génotype › Prédisposition génétique à une maladie › Sequence diversity analyses of an improved...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Sequence diversity analyses of an improved...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Sequence diversity analyses of an improved...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Sequence diversity analyses of an improved...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Cercopithecidae › Cercopithecinae › Macaca › Macaca mulatta › Sequence diversity analyses of an improved...
questionsmedicales.fr › Sciences de l'information › Sources d'information › Services d'information › Documentation › Données de séquences moléculaires › Annotation de séquence moléculaire › Sequence diversity analyses of an improved...
questionsmedicales.fr › Phénomènes génétiques › Variation génétique › Polymorphisme génétique › Polymorphisme de nucléotide simple › Sequence diversity analyses of an improved...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Analyse de séquence › Analyse de séquence d'ADN › Séquençage du génome entier › Sequence diversity analyses of an improved...