TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
22 12 2020
Historique:
received: 22 09 2020
accepted: 20 11 2020
entrez: 23 12 2020
pubmed: 24 12 2020
medline: 14 1 2021
Statut: epublish

Résumé

During oocyte growth, transcription is required to create RNA and protein reserves to achieve maternal competence. During this period, the general transcription factor TATA binding protein (TBP) is replaced by its paralogue, TBPL2 (TBP2 or TRF3), which is essential for RNA polymerase II transcription. We show that in oocytes TBPL2 does not assemble into a canonical TFIID complex. Our transcript analyses demonstrate that TBPL2 mediates transcription of oocyte-expressed genes, including mRNA survey genes, as well as specific endogenous retroviral elements. Transcription start site (TSS) mapping indicates that TBPL2 has a strong preference for TATA-like motif in core promoters driving sharp TSS selection, in contrast with canonical TBP/TFIID-driven TATA-less promoters that have broader TSS architecture. Thus, we show a role for the TBPL2/TFIIA complex in the establishment of the oocyte transcriptome by using a specific TSS recognition code.

Identifiants

pubmed: 33353944
doi: 10.1038/s41467-020-20239-4
pii: 10.1038/s41467-020-20239-4
pmc: PMC7755920
doi:

Substances chimiques

Nuclear Proteins 0
RNA, Messenger 0
Transcription Factor TFIIA 0
Transcription Factor TFIID 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

6439

Subventions

Organisme : Medical Research Council
ID : MC_UP_1102/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 106115/Z/14/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 106955/Z/15/Z
Pays : United Kingdom

Références

Nat Struct Mol Biol. 2013 Mar;20(3):332-8
pubmed: 23353788
Genome Res. 2018 Dec;28(12):1943-1956
pubmed: 30404778
Genome Biol. 2014;15(12):550
pubmed: 25516281
Development. 2019 Jun 12;146(11):
pubmed: 31189646
Genome Res. 2017 Aug;27(8):1384-1394
pubmed: 28522611
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Curr Biol. 2001 Feb 20;11(4):282-7
pubmed: 11250159
Cell Mol Life Sci. 2014 May;71(9):1581-605
pubmed: 24045705
Mol Cell Biol. 2012 May;32(10):1984-97
pubmed: 22411629
Bioinformatics. 2015 Jan 15;31(2):166-9
pubmed: 25260700
Mol Cell. 2008 Oct 10;32(1):96-105
pubmed: 18851836
Nat Rev Mol Cell Biol. 2018 Oct;19(10):621-637
pubmed: 29946135
Development. 2002 Feb;129(4):945-55
pubmed: 11861477
Cell. 1997 Oct 3;91(1):71-83
pubmed: 9335336
J Proteome Res. 2006 Sep;5(9):2339-47
pubmed: 16944946
Mol Cell. 2000 Sep;6(3):705-13
pubmed: 11030349
Genome Biol. 2009;10(3):R25
pubmed: 19261174
Nat Struct Mol Biol. 2019 Sep;26(9):783-791
pubmed: 31439941
Curr Biol. 1997 Feb 1;7(2):148-51
pubmed: 9016703
Biol Reprod. 2013 Jan 10;88(1):11
pubmed: 23136299
Genome Biol. 2015 Sep 25;16:209
pubmed: 26408185
Nucleic Acids Res. 2003 Apr 15;31(8):2127-33
pubmed: 12682363
Gene Expr Patterns. 2006 Apr;6(4):409-19
pubmed: 16412700
Mol Cell Endocrinol. 2012 Jun 5;356(1-2):31-9
pubmed: 21856374
Biochem Soc Trans. 2014 Feb;42(1):184-7
pubmed: 24450649
Mol Cell. 2018 Oct 4;72(1):10-17
pubmed: 30290147
Nat Rev Genet. 2012 Mar 06;13(4):233-45
pubmed: 22392219
Nucleic Acids Res. 1999 Feb 1;27(3):750-5
pubmed: 9889269
Genes Dev. 2002 Mar 15;16(6):673-5
pubmed: 11963920
Proc Natl Acad Sci U S A. 1999 Nov 23;96(24):13720-5
pubmed: 10570139
Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):14887-91
pubmed: 14634207
Genes Dev. 1993 Jul;7(7B):1291-308
pubmed: 8330735
Nucleic Acids Res. 2015 Apr 30;43(8):e51
pubmed: 25653163
J Biol Chem. 1999 Jun 18;274(25):18040-8
pubmed: 10364255
Genome Biol. 2004;5(3):R14
pubmed: 15003117
Dev Cell. 2004 Oct;7(4):597-606
pubmed: 15469847
Mol Cell. 2012 Feb 24;45(4):439-46
pubmed: 22365827
EMBO J. 2007 Sep 5;26(17):3900-9
pubmed: 17703192
Nature. 2014 Mar 20;507(7492):381-385
pubmed: 24531765
Genes Dev. 2009 Sep 15;23(18):2210-23
pubmed: 19759265
Nat Struct Mol Biol. 2016 May;23(5):387-94
pubmed: 27065194
Nat Genet. 2000 Jul;25(3):279-83
pubmed: 10888873
Mech Dev. 2001 Aug;106(1-2):203-5
pubmed: 11472857
Nat Genet. 2006 Jun;38(6):626-35
pubmed: 16645617
FEBS Lett. 1999 May 21;451(2):142-6
pubmed: 10371154
Front Biosci. 2007 May 01;12:3713-26
pubmed: 17485333
Mol Cell. 2010 May 28;38(4):576-89
pubmed: 20513432
Mol Cell. 2001 Mar;7(3):509-15
pubmed: 11463376
Science. 2001 May 11;292(5519):1153-5
pubmed: 11352070
Curr Biol. 2004 Apr 6;14(7):593-8
pubmed: 15062100
Nat Genet. 2009 May;41(5):563-71
pubmed: 19377475
Curr Opin Genet Dev. 2010 Oct;20(5):533-40
pubmed: 20598874
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
J Reprod Fertil. 1968 Dec;17(3):555-7
pubmed: 5715685
Mol Cell. 2016 Jun 2;62(5):766-76
pubmed: 27259207
Trends Biochem Sci. 2017 Nov;42(11):850-861
pubmed: 28964624
Nature. 1996 Oct 10;383(6600):531-5
pubmed: 8849725
Mol Cell. 2000 Sep;6(3):715-22
pubmed: 11030350
Science. 2000 Dec 22;290(5500):2312-5
pubmed: 11125147
Proc Natl Acad Sci U S A. 2004 Sep 14;101(37):13525-30
pubmed: 15345743
Elife. 2016 Feb 25;5:
pubmed: 26880551
Cell. 2014 Mar 27;157(1):13-25
pubmed: 24679523
Dev Biol. 2005 Dec 15;288(2):405-19
pubmed: 16289522
Sci Rep. 2016 Aug 31;6:32069
pubmed: 27576952
BMC Biol. 2009 Aug 03;7:45
pubmed: 19650908
Reproduction. 2007 Jul;134(1):51-62
pubmed: 17641088
Proc Natl Acad Sci U S A. 1999 Apr 27;96(9):4791-6
pubmed: 10220372

Auteurs

Changwei Yu (C)

Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404, Illkirch, France.
Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404, Illkirch, France.
Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404, Illkirch, France.
Université de Strasbourg, 67404, Illkirch, France.

Nevena Cvetesic (N)

Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.

Vincent Hisler (V)

Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404, Illkirch, France.
Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404, Illkirch, France.
Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404, Illkirch, France.
Université de Strasbourg, 67404, Illkirch, France.

Kapil Gupta (K)

Max Planck Bristol Centre for Minimal Biology, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK.

Tao Ye (T)

Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404, Illkirch, France.
Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404, Illkirch, France.
Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404, Illkirch, France.
Université de Strasbourg, 67404, Illkirch, France.

Emese Gazdag (E)

Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404, Illkirch, France.
Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404, Illkirch, France.
Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404, Illkirch, France.
Université de Strasbourg, 67404, Illkirch, France.

Luc Negroni (L)

Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404, Illkirch, France.
Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404, Illkirch, France.
Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404, Illkirch, France.
Université de Strasbourg, 67404, Illkirch, France.

Petra Hajkova (P)

Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.

Imre Berger (I)

Max Planck Bristol Centre for Minimal Biology, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK.

Boris Lenhard (B)

Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.

Ferenc Müller (F)

Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK.

Stéphane D Vincent (SD)

Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404, Illkirch, France. vincent@igbmc.fr.
Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404, Illkirch, France. vincent@igbmc.fr.
Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404, Illkirch, France. vincent@igbmc.fr.
Université de Strasbourg, 67404, Illkirch, France. vincent@igbmc.fr.

László Tora (L)

Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404, Illkirch, France. laszlo@igbmc.fr.
Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404, Illkirch, France. laszlo@igbmc.fr.
Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404, Illkirch, France. laszlo@igbmc.fr.
Université de Strasbourg, 67404, Illkirch, France. laszlo@igbmc.fr.

Articles similaires

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male
Humans Meals Time Factors Female Adult

Classifications MeSH