Detection of selection signatures for response to Aleutian mink disease virus infection in American mink.
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
03 02 2021
03 02 2021
Historique:
received:
20
06
2020
accepted:
21
01
2021
entrez:
4
2
2021
pubmed:
5
2
2021
medline:
16
11
2021
Statut:
epublish
Résumé
Aleutian disease (AD) is the most significant health issue for farmed American mink. The objective of this study was to identify the genomic regions subjected to selection for response to infection with Aleutian mink disease virus (AMDV) in American mink using genotyping by sequencing (GBS) data. A total of 225 black mink were inoculated with AMDV and genotyped using a GBS assay based on the sequencing of ApeKI-digested libraries. Five AD-characterized phenotypes were used to assign animals to pairwise groups. Signatures of selection were detected using integrated measurement of fixation index (F
Identifiants
pubmed: 33536540
doi: 10.1038/s41598-021-82522-8
pii: 10.1038/s41598-021-82522-8
pmc: PMC7859209
doi:
Substances chimiques
Antibodies, Viral
0
DNA, Viral
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
2944Références
Acta Vet Scand. 1988;29(3-4):315-21
pubmed: 3256231
Viral Immunol. 2018 Jan/Feb;31(1):69-77
pubmed: 28829241
G3 (Bethesda). 2016 Sep 08;6(9):2929-35
pubmed: 27449513
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Nat Rev Genet. 2010 Jan;11(1):17-30
pubmed: 19953080
Proc Natl Acad Sci U S A. 1979 Oct;76(10):5269-73
pubmed: 291943
Virus Res. 2019 Sep;270:197665
pubmed: 31306681
J Anim Sci Biotechnol. 2018 Sep 13;9:65
pubmed: 30221000
Cell. 2001 Oct 5;107(1):27-41
pubmed: 11595183
BMC Med Genet. 2019 Feb 13;20(1):30
pubmed: 30760222
Front Biol. 1976;44:175-205
pubmed: 60259
Am J Hum Genet. 2009 Sep;85(3):328-37
pubmed: 19732867
Mol Cell Biol. 2004 Dec;24(23):10277-88
pubmed: 15542837
J Allergy Clin Immunol. 2014 Jun;133(6):1702-8.e5
pubmed: 24698315
Pol J Vet Sci. 2011;14(1):69-76
pubmed: 21528714
Curr Opin Rheumatol. 2012 Jul;24(4):351-8
pubmed: 22488076
Cell Res. 2016 Apr;26(4):457-83
pubmed: 27012466
Genetics. 2013 Mar;193(3):929-41
pubmed: 23307896
Signal Transduct Target Ther. 2018 Jun 8;3:15
pubmed: 29892481
Nat Immunol. 2007 Mar;8(3):247-56
pubmed: 17277779
Curr Opin Genet Dev. 2014 Dec;29:31-8
pubmed: 25170983
J Clin Microbiol. 1978 Jan;7(1):18-22
pubmed: 203601
J Virol. 2017 Jun 9;91(13):
pubmed: 28404855
J Virol. 1984 Apr;50(1):38-41
pubmed: 6199516
Am J Pathol. 1973 May;71(2):331-44
pubmed: 4576760
Res Vet Sci. 1978 Mar;24(2):200-4
pubmed: 206934
DNA Cell Biol. 1998 Jun;17(6):493-500
pubmed: 9655242
Infect Immun. 1983 Sep;41(3):1016-23
pubmed: 6193063
PLoS One. 2014 Jan 15;9(1):e85454
pubmed: 24454871
Sci Rep. 2018 Jul 10;8(1):10405
pubmed: 29991772
Int J Reprod Biomed. 2017 Dec;15(12):749-756
pubmed: 29492471
Sci Adv. 2015 Sep 18;1(8):e1500296
pubmed: 26601257
BMC Genet. 2018 Nov 12;19(1):103
pubmed: 30419805
Nature. 2015 Oct 1;526(7571):82-90
pubmed: 26367797
J Virol Methods. 2011 Jan;171(1):81-5
pubmed: 20951744
Genome Res. 2010 Sep;20(9):1297-303
pubmed: 20644199
J Biol Chem. 2014 Jun 20;289(25):17941-50
pubmed: 24811165
J Virol. 2010 Jul;84(13):6748-59
pubmed: 20427542
Nat Commun. 2013;4:2071
pubmed: 23817352
Heredity (Edinb). 2015 Nov;115(5):426-36
pubmed: 25990878
J Biol Chem. 1993 Jul 15;268(20):15185-92
pubmed: 7686911
J Gen Virol. 2015 Jun;96(Pt 6):1423-1435
pubmed: 25667324
PLoS One. 2013;8(3):e58022
pubmed: 23505453
J Virol. 1996 Mar;70(3):1455-66
pubmed: 8627663
Nature. 2014 Jan 23;505(7484):569-73
pubmed: 24317697
Am J Vet Res. 1996 Dec;57(12):1753-8
pubmed: 8950430
Genomics. 2019 Mar;111(2):186-195
pubmed: 29427639
Gene. 2014 May 1;540(2):133-9
pubmed: 24613755
Front Immunol. 2019 Mar 22;10:538
pubmed: 30967870
Elife. 2012 Nov 13;1:e00049
pubmed: 23150796
Immunity. 2004 Oct;21(4):575-87
pubmed: 15485634
Acta Biochim Biophys Sin (Shanghai). 2017 Oct 1;49(10):935-944
pubmed: 28981605
BMC Genomics. 2016 Nov 3;17(1):863
pubmed: 27809776
Biol Reprod. 2014 Mar 13;90(3):57
pubmed: 24451989
Nat Commun. 2018 Apr 24;9(1):1631
pubmed: 29691385
PLoS One. 2019 Mar 14;14(3):e0213873
pubmed: 30870528
J Virol. 1993 Dec;67(12):7017-24
pubmed: 8230426
Am J Pathol. 1994 Jun;144(6):1326-33
pubmed: 8203470
Genes Immun. 2012 Jul;13(5):388-98
pubmed: 22495533
Virus Evol. 2016 Feb 27;2(1):vew004
pubmed: 27774297
Vet Microbiol. 2014 Jan 31;168(2-4):420-7
pubmed: 24389253
BMC Genomics. 2014 Jul 30;15:637
pubmed: 25074012
Nature. 2011 Dec 21;481(7381):371-5
pubmed: 22190037
J Vet Diagn Invest. 2015 May;27(3):287-94
pubmed: 25862712
Am J Hum Genet. 2006 Apr;78(4):629-44
pubmed: 16532393
Nature. 2010 Mar 25;464(7288):587-91
pubmed: 20220755
J Biol Chem. 2007 Jun 29;282(26):18945-52
pubmed: 17478420
Blood Cancer J. 2018 May 24;8(5):48
pubmed: 29795444
G3 (Bethesda). 2018 Nov 6;8(11):3617-3625
pubmed: 30237295
J Immunol. 2013 Jun 1;190(11):5545-58
pubmed: 23636062
Curr Opin Immunol. 2010 Apr;22(2):206-11
pubmed: 20144853
Genome Res. 2009 Sep;19(9):1639-45
pubmed: 19541911
Sci Rep. 2017 Nov 6;7(1):14564
pubmed: 29109430
Leukemia. 2010 Dec;24(12):2063-71
pubmed: 20861921
Infect Agents Dis. 1994 Dec;3(6):279-301
pubmed: 7889316
Vet Microbiol. 2017 May;204:59-63
pubmed: 28532807
Infect Immun. 1975 Jan;11(1):92-4
pubmed: 803925
PLoS Biol. 2010 Sep 14;8(9):
pubmed: 20856902
Genes Dev. 1994 Feb 1;8(3):290-9
pubmed: 8314083
J Am Soc Nephrol. 2006 Jul;17(7):1807-19
pubmed: 16738015
Cancer Res. 1999 Apr 1;59(7 Suppl):1789s-1793s
pubmed: 10197598
Prev Vet Med. 2012 Oct 1;106(3-4):332-8
pubmed: 22497690
PLoS One. 2014 Aug 15;9(8):e103813
pubmed: 25126940
Acta Vet Scand. 2016 Jun 01;58(1):35
pubmed: 27250118
Am J Hum Genet. 2016 Jan 7;98(1):5-21
pubmed: 26748513
Sci Rep. 2016 Dec 01;6:38096
pubmed: 27905513
PLoS One. 2016 Sep 15;11(9):e0163118
pubmed: 27631783
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
J Biol Chem. 1997 May 23;272(21):13779-85
pubmed: 9153233
Front Genet. 2019 Oct 01;10:901
pubmed: 31632437
Cell Rep. 2016 Oct 25;17(5):1357-1368
pubmed: 27783949
Sci Rep. 2018 Aug 28;8(1):12984
pubmed: 30154520
Mol Aspects Med. 2013 Apr-Jun;34(2-3):252-69
pubmed: 23506869
Annu Rev Genet. 2013;47:97-120
pubmed: 24274750
Immunity. 2016 Jun 21;44(6):1392-405
pubmed: 27287411
Elife. 2019 Aug 13;8:
pubmed: 31408005
Res Vet Sci. 2019 Jun;124:85-92
pubmed: 30856435
Mol Hum Reprod. 2014 Aug;20(8):719-35
pubmed: 24770949
Arthritis Res Ther. 2012 Oct 31;14(5):226
pubmed: 23116200
Am J Pathol. 1963 Jul;43:33-53
pubmed: 13928820
Am J Hum Genet. 2013 Oct 3;93(4):697-710
pubmed: 24094746
Cell. 2008 Oct 3;135(1):37-48
pubmed: 18854153
Monoclon Antib Immunodiagn Immunother. 2019 Apr;38(2):70-74
pubmed: 31009334
J Virol. 2004 Jun;78(12):6517-26
pubmed: 15163745
Nucleic Acids Res. 1997 Nov 15;25(22):4692-3
pubmed: 9358185
Int J Evol Biol. 2013;2013:204240
pubmed: 23533945
Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19529-36
pubmed: 23151514
Acta Biochim Biophys Sin (Shanghai). 2011 Oct;43(10):745-56
pubmed: 21903638
Front Genet. 2019 Sep 19;10:893
pubmed: 31608121
Immunol Lett. 2010 Feb 16;128(2):143-7
pubmed: 19954752
Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9440-5
pubmed: 12883005
PLoS One. 2013 May 22;8(5):e64192
pubmed: 23717564
Infect Immun. 2010 Mar;78(3):1012-21
pubmed: 20008541
Evolution. 1984 Nov;38(6):1358-1370
pubmed: 28563791
Mol Biol Evol. 2016 Oct;33(10):2576-92
pubmed: 27401233
Arthritis Rheumatol. 2014 Sep;66(9):2621-7
pubmed: 24891336
Hum Reprod. 2006 Jul;21(7):1705-19
pubmed: 16571642
Acta Vet Scand. 2013 Feb 08;55:10
pubmed: 23394546
PLoS One. 2013;8(3):e59137
pubmed: 23536862
PLoS One. 2015 Dec 14;10(12):e0143653
pubmed: 26657885
Biosci Biotechnol Biochem. 2009 May;73(5):1142-8
pubmed: 19420709
Genes (Basel). 2019 Mar 28;10(4):
pubmed: 30925743
PLoS One. 2015 Jan 23;10(1):e0115861
pubmed: 25615642
J Immunol. 2019 Jan 15;202(2):441-450
pubmed: 30552163
Immun Inflamm Dis. 2020 Jun;8(2):150-164
pubmed: 32167659
Nat Rev Immunol. 2008 Sep;8(9):663-74
pubmed: 18670423
Genome Res. 2003 Sep;13(9):2129-41
pubmed: 12952881